Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p03
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    51   2e-07
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.18 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   1.2  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.2  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   1.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.0  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   6.6  

>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +1

Query: 298 NALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYLL 420
           N+ P RQYL++ V P+LL+G+  LA++RP +P+ +L  +LL
Sbjct: 3   NSAPARQYLNEKVTPVLLEGMKILARDRPENPLQFLGQFLL 43


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 717 IDYIFSFCQL*CTYAYYKANWYIFSSLLNNRTI 619
           ID  FS C   CT  Y+  N Y+   +LN R +
Sbjct: 81  IDAFFSMCLRSCTIIYFSMNPYMLCEILNARNV 113


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 274  NRKSRIDLNALPTRQYLDQTVVPILLQGLS 363
            NR+ R++ + LP + Y+DQ  +  L++ L+
Sbjct: 1333 NRELRLEFSVLPCKMYIDQDTLDFLIRFLT 1362


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -2

Query: 558 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 454
           K  P+I++ +A  +V I +     LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -2

Query: 558 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 454
           K  P+I++ +A  +V I +     LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = -2

Query: 354 LQQYGYYCLVQILSSR*SIEVNSGFSVSIGFIVFFH*YNFL*IIFFLSSNLFSKIYPSLY 175
           LQ+Y YYC +Q L     I   +G      F+ +FH   +  I  F  SNL + + P+L 
Sbjct: 380 LQRYDYYCFMQDLHDGSIINDINGI-----FLQYFH-RQYDHIALF--SNLMNSVLPNLQ 431

Query: 174 VEVNFK 157
            ++N K
Sbjct: 432 -QLNLK 436


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 568 SVQQNVSSHCFEISYFHCLHYNKAILMFVGLLVDYCYCL 452
           SV  ++ S  +EI+  HC H+++ +L  +  L  Y + L
Sbjct: 409 SVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLL 447


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 558 KMFPVIALRLATFIVCIIIKLYLCLWVC-WLI 466
           K  P+I++ +A  +V I + +   L++C WL+
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLL 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,585
Number of Sequences: 5004
Number of extensions: 56332
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)