Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p03
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical pr...    73   3e-13
U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.       73   3e-13
Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical pr...    40   0.002
U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical pr...    37   0.013
Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical ...    30   2.0  

>Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.6 protein.
          Length = 123

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/70 (47%), Positives = 46/70 (65%)
 Frame = +1

Query: 241 ILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYLL 420
           +L     +   N+ +  + + +PTRQYLD TVVPILLQGL ALAK+RP +PI +LA +LL
Sbjct: 47  VLSANGGQQTGNQSAPRNTSTVPTRQYLDSTVVPILLQGLGALAKDRPENPIEFLANFLL 106

Query: 421 KNKTTFELAN 450
           + K  +   N
Sbjct: 107 REKDRYNAEN 116


>U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.
          Length = 123

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/70 (47%), Positives = 46/70 (65%)
 Frame = +1

Query: 241 ILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYLL 420
           +L     +   N+ +  + + +PTRQYLD TVVPILLQGL ALAK+RP +PI +LA +LL
Sbjct: 47  VLSANGGQQTGNQSAPRNTSTVPTRQYLDSTVVPILLQGLGALAKDRPENPIEFLANFLL 106

Query: 421 KNKTTFELAN 450
           + K  +   N
Sbjct: 107 REKDRYNAEN 116


>Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical
           protein F34D10.7 protein.
          Length = 691

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 280 KSRIDLNALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYLLK 423
           + +IDL       YL +TV P+L + L+ +   RP DPI ++A +L K
Sbjct: 632 RGKIDLPTSENGVYLARTVAPVLTKALAEVLLRRPADPIGFIAEWLSK 679


>U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical
           protein R05G6.5 protein.
          Length = 188

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 313 RQYLDQTVVPILLQGLSALAKERPPDPINYLAAYL 417
           + YL   V P L QGL+ +A ERP +PI +LA YL
Sbjct: 149 KDYLSVEVWPKLSQGLARVAVERPDNPIKWLADYL 183


>Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 313 RQYLDQTVVPILLQGL-SALAKERPPDPINYLAAYLLKNKTT 435
           R YL    +P L +GL + L   RP DP+ +L   ++K ++T
Sbjct: 8   RIYLQDHRIPQLFEGLMTGLIYSRPADPLKFLEESIVKIRST 49


>AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 313 RQYLDQTVVPILLQGL-SALAKERPPDPINYLAAYLLKNKTT 435
           R YL    +P L +GL + L   RP DP+ +L   ++K ++T
Sbjct: 8   RIYLQDHRIPQLFEGLMTGLIYSRPADPLKFLEESIVKIRST 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,365,480
Number of Sequences: 27780
Number of extensions: 300616
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)