Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p01
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    24   6.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    24   6.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    24   7.9  

>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 302 SGRRTVALSLKVDISLEPGGVPRSISLA 219
           SG  + ALS +    LEP G+ R +S A
Sbjct: 155 SGSESNALSSRGSFELEPHGIHRHVSRA 182


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 329 VVPGRVVAPSGRRTVALSLKVDIS 258
           VVP   V PS R+    SL +D+S
Sbjct: 539 VVPSSPVVPSPRKATNKSLSMDVS 562


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 240 YTARLKTYVDFQRKRDRAT 296
           Y   +K YV+F +K DR T
Sbjct: 593 YPDAVKVYVEFAKKNDRKT 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,636
Number of Sequences: 5004
Number of extensions: 8846
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)