Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p01
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    27   5.5  
08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690     26   9.6  
01_03_0215 - 13868407-13868622                                         26   9.6  

>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 DAPRYTARLKTYVDFQRKRDRATAAR 305
           +A R  AR + Y D  R R RATAAR
Sbjct: 336 NAARTVARFEAYRDAVRTRCRATAAR 361


>08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690
          Length = 392

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 350 LGGHDLVVVPGRVV 309
           LGGHD+V+ P +VV
Sbjct: 118 LGGHDIVIPPNKVV 131


>01_03_0215 - 13868407-13868622
          Length = 71

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 260 LCRLSEKARPCD--GRSAQPHGRAPRXDHGR 346
           +  +S+K   C   G SAQ HG+  R  HGR
Sbjct: 1   MATVSQKLGDCGDCGASAQAHGQRGRRRHGR 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,397,454
Number of Sequences: 37544
Number of extensions: 84073
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)