Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o23
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    29   0.79 
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    27   3.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   7.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.4  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    25   9.7  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 72  HLNAHLYFQYSIFQYFSMFDNI 7
           H   H+YF Y+  Q+F++FD +
Sbjct: 258 HAAHHMYFNYNYGQFFTLFDRL 279


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 72  HLNAHLYFQYSIFQYFSMFDNIMN 1
           H   H+YF Y+  Q+ ++FD + N
Sbjct: 225 HNGHHIYFNYNYGQFTTLFDRLGN 248


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
 Frame = -1

Query: 330 SREKRKSCFVIISNYIFNIKQF---PKNPENRMI*IF*ELQNSKWLHFYKLLCNR*L--- 169
           S +  ++   I++NYIF+   F   P+  E +    F +L+  K+  F++ L  + L   
Sbjct: 451 SSDSCRAILDILNNYIFSCPLFLVTPEELEEQYTDFFKKLK-EKYGEFFQNLLKKELTGK 509

Query: 168 PFIDIMGSAAVITQKMNILLNCNIRYPSNLIRHLNAHLYF 49
           P  D+ G   V  Q      N    + + +   L+ H +F
Sbjct: 510 PESDLEGLRLVGVQLQATYENLKSNFSARIFNQLSVHSFF 549


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 224 NYRIQSGYIFTNYSVIDSCHLSILWVQLQLL 132
           NY ++   IF  ++   SCH +IL   L+LL
Sbjct: 133 NYPVRGFDIFMKHATKHSCHFNILKCFLKLL 163


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 521 TGQTAKFDEDGDLDAVRPKRKVIRIEHSPK 610
           TG T +   DG     RP ++V R  H PK
Sbjct: 269 TGVTTRTGNDGGSPINRPAKRVKRQNHIPK 298


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 345 EILNDSREKRKSCFVIISNYIFNIKQFPKNPE 250
           E ++D R+KR +  V++  +IF +++  K PE
Sbjct: 237 EEVDDKRKKRFNKIVVLK-HIFTLEELDKTPE 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,040
Number of Sequences: 5004
Number of extensions: 51349
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)