Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o23
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074...    33   0.15 
04_04_1595 + 34678134-34678223,34678309-34678511,34679924-34680227     28   5.8  

>06_03_0878 +
           25606788-25606926,25607205-25607279,25607362-25607426,
           25607504-25607606,25607712-25607762,25608271-25608424,
           25608781-25608925,25609039-25609144,25609267-25609415
          Length = 328

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
 Frame = +2

Query: 491 ISEFPFLL-PITGQ--TAKFDEDGDLDAVRPKRK------VIRIEHSPKTAISLVGRQVW 643
           +S F F   P+ G       DEDGDL   R +R       V+ ++H   +++  VG QVW
Sbjct: 36  VSRFSFSSRPLGGSPDAVTVDEDGDLVLDRRRRNRGRSDHVLTVQHGITSSLRSVGLQVW 95

Query: 644 RGAFLL 661
           + A LL
Sbjct: 96  KAALLL 101


>04_04_1595 + 34678134-34678223,34678309-34678511,34679924-34680227
          Length = 198

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 615 AVLGLCSILITFLLGLTASRSPSSSNLAVCPVMGSK 508
           A  G C I+  F+ G TA+R+     +A+C   GS+
Sbjct: 88  AFSGFCFIVCCFVYGETATRAGGRRRIALCVRFGSQ 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,953,662
Number of Sequences: 37544
Number of extensions: 266500
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)