Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o23
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    31   0.96 
Z74028-7|CAA98426.2|  341|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical p...    29   2.9  
U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 111 LNCNIRYPSNLIRHLNAHLYFQYSIFQY 28
           +   IR PS +++   AHL++QY +F Y
Sbjct: 1   MKLRIRNPSGILQEYLAHLFYQYGLFIY 28


>Z74028-7|CAA98426.2|  341|Caenorhabditis elegans Hypothetical
           protein C14C10.2a protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 99  IRYPSNLIRHLNAHLYFQYSIFQYFSMFDNIM 4
           ++YP  LIR L  H + Q     +FS+FD ++
Sbjct: 248 LKYPMPLIRLLEIHQFIQIPTSTFFSIFDELI 279


>Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical
           protein F58A4.14 protein.
          Length = 443

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 204 LHFYKLLCNR*LPF-IDIMGSAAVITQKMNILLNCNIRYPSNLIRHLNAHLYFQYSIFQY 28
           LH+ KL C    P     +G+ AVI   MN   N  + Y  ++    N      Y+IF+Y
Sbjct: 355 LHYIKL-CTELYPQNAKAVGAMAVILSHMNDDKNARLAYKKSIELKKNPSTILNYAIFEY 413


>U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical
           protein C12D5.9 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 654 NAPLHTCRPTKDIAVLGLCSILITFLLGLTASRSPSSSNLAVCPVMGS 511
           N+PL  C P +   + G C   +  L+ LT    P+   + +   M S
Sbjct: 26  NSPLRVCTPKEQFVLEGKCLRYVNDLMYLTEEYPPTQITVPIAKNMSS 73


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 609 LGLCSILITFLLGLTASRSPSSSNLAVC 526
           LG+C I++TF+  LT       +NL  C
Sbjct: 270 LGMCPIMLTFMAFLTGHYYQEMANLTFC 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,372
Number of Sequences: 27780
Number of extensions: 280926
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)