Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o22
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23...    30   1.5  
02_05_1128 + 34314866-34315294,34315365-34315440,34315548-343156...    30   1.5  
01_06_0482 - 29672720-29673854,29673941-29676267                       29   2.6  
05_07_0250 + 28669593-28669660,28669759-28669817,28670144-286702...    29   3.4  
06_01_0223 - 1709897-1709912,1710188-1712520                           29   4.5  
01_06_0299 + 28305447-28305729,28305892-28306104,28306915-283070...    29   4.5  
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    28   6.0  

>05_01_0035 -
           232656-232781,233212-233322,233419-233563,233749-233882,
           234341-234412,234485-234548,234632-234699,234894-235129,
           236857-237166,237495-238460,238752-238931,239041-239346,
           239593-239727,239810-240046,240120-240308,240521-240709,
           240929-241024,241117-241323,241700-241893,242979-243216
          Length = 1400

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 509 PTKFVYEDVAIATYLLLLWEDRSLVKKQTFVDLGCGNGLLVYILCKE 649
           P+ F+ ED +   Y  L     S+ + +T  +LGCGNG +   L ++
Sbjct: 93  PSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIALAEK 139


>02_05_1128 +
           34314866-34315294,34315365-34315440,34315548-34315631,
           34315729-34315784,34316302-34316358,34316459-34316508,
           34316587-34316739,34316842-34316992,34317469-34317633
          Length = 406

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 599 VDLGCGNGLLVYILCKEGHAGLGIDV 676
           +D+GCG+GL    L ++GH  +G D+
Sbjct: 166 LDIGCGSGLSGETLTEQGHHWIGYDI 191


>01_06_0482 - 29672720-29673854,29673941-29676267
          Length = 1153

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -2

Query: 672 SIPSPAWPSLHNIYTNKPLPHPRSTNVCFFTKLRSSQSRSK*VAIATSSYTNF 514
           S+P PA PS+ N   +KP   P S+         SS S S   A +TSS ++F
Sbjct: 49  SLPLPA-PSVANQARHKPRLKPSSSTRKLLPSASSSSSSSAAAAASTSSSSSF 100


>05_07_0250 +
           28669593-28669660,28669759-28669817,28670144-28670248,
           28670983-28671019,28671446-28671542,28671700-28671781,
           28671870-28671939,28672049-28672212,28672897-28672940,
           28673021-28673176,28673273-28673494,28673736-28673883,
           28673947-28674034,28675032-28675159,28675259-28675323,
           28675380-28675426,28675427-28675539,28676003-28676019
          Length = 569

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 410 LTLVSSSKYFEKYNELKLKYGKDLVKIWPECTD 508
           L LVS     EK + L+  Y K+L+++W ECT+
Sbjct: 310 LPLVSLISSLEK-SPLEFYYPKELMQLWKECTE 341


>06_01_0223 - 1709897-1709912,1710188-1712520
          Length = 782

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 422 SSSKYFE-KYNELKLKYGKDLVKIWPECTDPTKFVYEDVA 538
           S  KY+E K  E+  +Y K +   WP+  D   + Y ++A
Sbjct: 318 SEIKYYENKLKEINEEYNKSIKCEWPKIRDKELYFYRELA 357


>01_06_0299 +
           28305447-28305729,28305892-28306104,28306915-28307043,
           28307677-28307857,28308329-28308425,28309157-28309260,
           28309734-28309785,28310040-28310252
          Length = 423

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 569 DRSLVKKQTFVDLGCGNGLLVYILCKEGHAGL 664
           D   +     +D+G GNGLL+  L K+G + L
Sbjct: 242 DEKQLSNYPVLDVGTGNGLLLQALAKQGFSNL 273


>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 305 SFHHHSVHSRQSYHSQHEYH 246
           ++HHH  H +  +H QH  H
Sbjct: 62  AYHHHQQHYQPHHHHQHHQH 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,716,149
Number of Sequences: 37544
Number of extensions: 313620
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)