Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o22
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 359 TTETESNNGKKKICTASLTLVSSSKYFEKYNELKLKYGKDLVK 487
           TT   SNN + +I  ASL   +S K      +    YG +L +
Sbjct: 727 TTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPPYGMELTE 769


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 344 QFIKWTTETESNNGKKKICTASLTLVSSSKYFEKYN--ELKLKYGKDLVKI 490
           Q +K +  +    G   I T  +    SSKY  +YN  E KL Y  + V++
Sbjct: 180 QNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYNDPEYKLDYFMEDVEL 230


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 326 KNKLLPQFIKWTTETESNNGKKKICTASLTLV 421
           +N LLP F+ +  +    +GK  +  A+  L+
Sbjct: 398 QNSLLPNFVGYKGKHIGKSGKVDVINAAKELI 429


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 575  SLVKKQTFVDLGCGNGLLVYILCKEG 652
            S V+K T  +L CG+   +Y+    G
Sbjct: 1417 STVQKYTLENLLCGSRYQIYVTAYNG 1442


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 593 TFVDLGCGNGLLVYILC 643
           TF+ L  GNGL+++I C
Sbjct: 59  TFLAL-LGNGLVIWIFC 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,468
Number of Sequences: 438
Number of extensions: 4531
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)