Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o19
         (296 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    27   0.032
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   3.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    20   4.9  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    19   8.5  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 0.032
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +1

Query: 64  ISKIFRDNPSPREAAFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTA 243
           +S +F  + +PR A+ ET  S +      A + D  D+L+  S   Y+K +SER++    
Sbjct: 114 LSPLFH-SAAPRTASRETKSSESDSG---ASSADPDDELRSSSAFSYIKPSSERDYFSVK 169

Query: 244 RNDNP 258
           +  +P
Sbjct: 170 KLPSP 174


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 91  SPREAAFETSLSIAVGAPRYAR 156
           +PR      S +  +G PRY R
Sbjct: 52  TPRWGCARASSATTMGGPRYGR 73


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 163 DVYDDLQLESIRQ 201
           D Y DL L+SIR+
Sbjct: 222 DYYGDLDLKSIRK 234


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 APRYARNVDVYDDLQLESIRQYLKSASER 225
           AP YA ++DV    +L ++   ++   ER
Sbjct: 225 APLYASSIDVEGSQKLLNVDASIRGWIER 253


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,996
Number of Sequences: 336
Number of extensions: 838
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)