Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2o19
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 3.1
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 24 4.2
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 24 4.2
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 24 4.2
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 5.5
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 24 5.5
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.3
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 23 7.3
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 23 9.6
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 23 9.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 23 9.6
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 3.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 88 PSPREAAFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASE 222
P+P E S A R + DDLQ+E +R YL +E
Sbjct: 212 PTPLSFMSEMKDSSQFYANRVMKEFKGKDDLQIEWVRSYLTLLTE 256
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 73 IFRDNPSP-REAAFETSLSIAVGAPRYARNVDVYDD 177
I D P R+ +F +L + + +P +NV YDD
Sbjct: 21 IVEDIPKKYRKQSFRDNLKVYIESPESYKNVIYYDD 56
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 87 IVTKYFRNFHKLNVKKSRLL 28
++TK F H+ N+KK LL
Sbjct: 681 VITKSFARIHETNLKKQGLL 700
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 209 FRY*RIDSNCRSS*TSTFLAYLGAPTAILNEVSNAASRGDGLSRNI 72
+RY R+D + ++ S L PTA +N + ++R GL N+
Sbjct: 777 WRYLRLDGSTKADDRSKLLGVFNDPTAEVN-LFLLSTRAGGLGLNL 821
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 23.8 bits (49), Expect = 5.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 148 YARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNPLNPLTQS*GQKK 294
+ VD ES RQ+ KSA +K A N + ++ Q+ K
Sbjct: 616 FGAKVDDLKSTSKESARQFGKSALTERLQKLAGNSSNVSSSLQTSSSNK 664
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 211 SASERNFEKTARNDNPLNPLTQS*GQKK 294
S E+N + ++DN +NP T+ +KK
Sbjct: 294 STIEKNASEQKKDDNSVNPFTKIEEKKK 321
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 172 DDLQLESIRQYLKSASERNFEKTARNDNPLNPLTQS*G 285
D + S+R YL S+ F +++ +N +PL + G
Sbjct: 576 DSPRKTSLRNYLSSSWRLKFMRSSYQNNETDPLNPTSG 613
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +1
Query: 115 TSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNPL 261
T L +G +V IR+YL++ E F+K ++ + L
Sbjct: 72 TELEKNIGFKAKQESVSFQQKRTFLQIRKYLETIEENEFDKVRKSSDKL 120
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 82 DNPSPREAAFETSLSIAVGAPRYARNVDVYDD 177
DN S R+AA E + + GAP R Y D
Sbjct: 277 DN-SARQAALELLVCFSEGAPAMCRKSSDYTD 307
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 23.0 bits (47), Expect = 9.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +1
Query: 67 SKIFRDNPSPREA-------AFETSLSIAVGAPRYARNVDVYDDLQLESIRQ 201
S+ +DN + R A AF+ LS + + VYD + LE++RQ
Sbjct: 303 SEFIKDNHTSRVAILISMKLAFQYQLSQVIPTLKLLLQSKVYDSVLLEALRQ 354
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 254 LSFRAVFSKLRSDAD 210
LSF+ + K+RSDAD
Sbjct: 1048 LSFKKDYEKIRSDAD 1062
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,943
Number of Sequences: 5004
Number of extensions: 15206
Number of successful extensions: 42
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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