Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2o19
(296 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0524 + 11179224-11179469,11179543-11181465 31 0.21
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572... 29 0.86
12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005... 27 2.6
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 27 2.6
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 27 2.6
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 27 2.6
10_08_0318 + 16706714-16706845,16707590-16708405,16708493-167086... 25 8.0
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 25 8.0
>02_02_0524 + 11179224-11179469,11179543-11181465
Length = 722
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 131 AILNEVSNAASRGDGLSRNIFEIFIN*MSKNHA 33
A+L + +AA DG R+ F I ++ MSK HA
Sbjct: 49 ALLRAIKSAARASDGAIRDAFRILLSLMSKPHA 81
>11_05_0063 -
18756289-18756390,18756769-18756954,18757053-18757223,
18757339-18757383,18758087-18758260,18758801-18758887,
18759349-18759510,18759945-18760015,18760296-18760435,
18760828-18760952,18761329-18761463,18762069-18762314,
18762530-18762755,18763039-18763091
Length = 640
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 197 RIDSNCRSS*TSTFLAYLGAPTAILNEVSNAASR 96
++D N S +S +++YL P +LNE + AA +
Sbjct: 488 QLDINISSRLSSEYISYLENPVELLNEAAKAAEK 521
>12_02_0925 -
24398851-24398998,24399478-24399718,24399886-24400536,
24400625-24400828,24400902-24401583,24401678-24401934,
24402010-24402704,24403150-24403397
Length = 1041
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 259 EDYRFAPFSRSCA 221
E YRF+P SRSCA
Sbjct: 16 ESYRFSPLSRSCA 28
>07_03_1652 -
28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 259 EDYRFAPFSRSCA 221
E YRF+P SRSCA
Sbjct: 16 ESYRFSPLSRSCA 28
>03_03_0039 -
13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 259 EDYRFAPFSRSCA 221
E YRF+P SRSCA
Sbjct: 16 ESYRFSPLSRSCA 28
>01_01_1009 +
7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 259 EDYRFAPFSRSCA 221
E YRF+P SRSCA
Sbjct: 16 ESYRFSPLSRSCA 28
>10_08_0318 +
16706714-16706845,16707590-16708405,16708493-16708666,
16708809-16708934,16709084-16709185
Length = 449
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 154 RNVDVYDDLQLESIRQYLKSASERNFEK 237
+ V + ++ + E I +Y+K +ERNF K
Sbjct: 344 KTVRLSNEERKEKIHRYIKKRNERNFSK 371
>01_06_1127 -
34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 88 PSPREAAFETSLSIA--VGAPRYARNVDVYDDLQLESIRQYLKSASE 222
P R+A+F +IA VG R+++ DD++ + + + SAS+
Sbjct: 460 PEVRDASFSVLTAIAKMVGMKPLERSLEKLDDVRKKKLSDMIGSASD 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,086,746
Number of Sequences: 37544
Number of extensions: 83509
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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