Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o19
         (296 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    34   0.037
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    34   0.037
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    28   1.8  
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    28   1.8  
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    28   1.8  
AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein ...    28   2.4  

>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 79  RDNPSPREAAFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNP 258
           R N    + A    L I  GAP Y RN +++ DL+++ + + +     +  EK   + NP
Sbjct: 806 RSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNP 865

Query: 259 L 261
           L
Sbjct: 866 L 866


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 79  RDNPSPREAAFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNP 258
           R N    + A    L I  GAP Y RN +++ DL+++ + + +     +  EK   + NP
Sbjct: 806 RSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNP 865

Query: 259 L 261
           L
Sbjct: 866 L 866


>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 133  VGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNPL 261
            + A RY R  D+     ++S  +    AS+R       ++NPL
Sbjct: 897  INASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPL 939


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 133  VGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNPL 261
            + A RY R  D+     ++S  +    AS+R       ++NPL
Sbjct: 897  INASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPL 939


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 133  VGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNPL 261
            + A RY R  D+     ++S  +    AS+R       ++NPL
Sbjct: 897  INASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPL 939


>AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein
           protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 133 VGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDNPL 261
           + A RY R  D+     ++S  +    AS+R       ++NPL
Sbjct: 450 INASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTDHENPL 492


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,450,474
Number of Sequences: 53049
Number of extensions: 147982
Number of successful extensions: 310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 527894775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)