Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2o19
(296 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46753-11|AAM98048.1| 425|Caenorhabditis elegans Dishevelled re... 26 4.2
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 26 5.6
AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical ... 26 5.6
AC087794-8|AAG53698.1| 214|Caenorhabditis elegans Hypothetical ... 26 5.6
U23514-3|AAC46542.2| 421|Caenorhabditis elegans Hypothetical pr... 25 7.4
U23514-2|AAM48532.1| 418|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z68297-1|CAA92593.2| 222|Caenorhabditis elegans Hypothetical pr... 25 9.7
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 25 9.7
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 25 9.7
AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rna... 25 9.7
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 25 9.7
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 25 9.7
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 25 9.7
>U46753-11|AAM98048.1| 425|Caenorhabditis elegans Dishevelled
related protein 1,isoform b protein.
Length = 425
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -2
Query: 232 RSCALTLTSDI--DVSILIVGHRKH 164
R+ L+LTS++ D S ++GHR+H
Sbjct: 76 RTSHLSLTSELSADASFYLIGHRRH 100
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 94 PREAAFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLK 210
P E +F+ L I N+ ++DD+ L+ +QYL+
Sbjct: 10 PSEPSFDDELLIWEFIYENTCNMQLFDDVNLDLFKQYLQ 48
>AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical
protein C34H4.2 protein.
Length = 449
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 57 KLNVKKSRLLSSIHYCHRF 1
KLNVK SR+ + YC F
Sbjct: 324 KLNVKSSRIFAGTFYCQYF 342
>AC087794-8|AAG53698.1| 214|Caenorhabditis elegans Hypothetical
protein Y32G9A.10 protein.
Length = 214
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 78 KYFRNFHKLNVKKSRLLSS 22
K F+NFH +N ++S LL++
Sbjct: 179 KKFQNFHSINFQRSELLNN 197
>U23514-3|AAC46542.2| 421|Caenorhabditis elegans Hypothetical
protein F48E8.7a protein.
Length = 421
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 51 NVKKSRLLSSIHYCHRF 1
N+KK LLS++ CHRF
Sbjct: 104 NLKKKDLLSAMLVCHRF 120
>U23514-2|AAM48532.1| 418|Caenorhabditis elegans Hypothetical
protein F48E8.7b protein.
Length = 418
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 51 NVKKSRLLSSIHYCHRF 1
N+KK LLS++ CHRF
Sbjct: 101 NLKKKDLLSAMLVCHRF 117
>Z68297-1|CAA92593.2| 222|Caenorhabditis elegans Hypothetical
protein F11A10.2 protein.
Length = 222
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 88 PSPREAAFETSLSIAVGAPRY 150
P+P++AA ET + +G P Y
Sbjct: 97 PAPQKAAVETKKFVKIGRPGY 117
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 106 AFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDN 255
+ E + + P+ R D DDL +I L S+SE ++NDN
Sbjct: 50 SLECDTPVKMQLPKTKRESD--DDLPSPTIDNLLSSSSESTVINASQNDN 97
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 106 AFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDN 255
+ E + + P+ R D DDL +I L S+SE ++NDN
Sbjct: 50 SLECDTPVKMQLPKTKRESD--DDLPSPTIDNLLSSSSESTVINASQNDN 97
>AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform a protein.
Length = 448
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 172 DDLQLESIRQYLKSASERNFEKTARNDNP 258
D+ LES+R LK + E + +ND P
Sbjct: 10 DEKYLESLRDLLKISQEFDASNAKQNDEP 38
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 172 DDLQLESIRQYLKSASERNFEKTARNDNP 258
D+ LES+R LK + E + +ND P
Sbjct: 10 DEKYLESLRDLLKISQEFDASNAKQNDEP 38
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 106 AFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDN 255
+ E + + P+ R D DDL +I L S+SE ++NDN
Sbjct: 50 SLECDTPVKMQLPKTKRESD--DDLPSPTIDNLLSSSSESTVINASQNDN 97
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 106 AFETSLSIAVGAPRYARNVDVYDDLQLESIRQYLKSASERNFEKTARNDN 255
+ E + + P+ R D DDL +I L S+SE ++NDN
Sbjct: 50 SLECDTPVKMQLPKTKRESD--DDLPSPTIDNLLSSSSESTVINASQNDN 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,574,531
Number of Sequences: 27780
Number of extensions: 81251
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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