Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o18
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi...    26   5.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   5.9  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.8  

>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +1

Query: 400 NFSLSSYFSSREIDP-----HLVGNGALPREGNGALIRTDVSDIGTDLEEEKNAEITN 558
           N   SS+F+S E  P     HL G    PRE   AL      D G   EEE+  E  N
Sbjct: 254 NTPFSSFFASLEETPGSYTAHL-GGVLSPREQTPALFTGQYPDNGVYYEEEEEEEDDN 310


>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 433 EIDPHLVGNGALPREGNGALIRTDVSDI-GTDLEE-EKNAEITNS 561
           E+D   +G+G+ P EG    +  D  ++   D+EE + +A+ITN+
Sbjct: 76  ELDEEELGSGSFPEEGEMDDMDGDNEEVEDHDIEEVDLDADITNA 120


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 548 SAFFSSSKSVPISLTS--VRISAPFPSLGSAPFPT 450
           S  F+++ + P+  T+  V I  P P+  S+PFP+
Sbjct: 771 SVGFTTTIATPVGTTAGTVLIDVPTPTASSSPFPS 805


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 616 FTLSPPLSILCFFSVLFV 563
           F +S P+S+LC FS+ F+
Sbjct: 616 FAVSIPVSLLCIFSIWFL 633


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 458 FPTRWGSISREEKYEDKEKLIRAIDDNV 375
           F + W S+ +  K +DK++LI  +D ++
Sbjct: 339 FVSYWVSLIKSRKQKDKKRLISLLDTSI 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,511
Number of Sequences: 5004
Number of extensions: 65772
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)