Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o18
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0264 - 21785450-21786928                                         32   0.38 
03_06_0743 - 35906119-35906247,35906747-35906869,35907841-359079...    29   3.5  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   4.7  
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162...    28   8.1  
01_01_0223 + 1901898-1901983,1902079-1902154,1902256-1902308,190...    28   8.1  

>11_06_0264 - 21785450-21786928
          Length = 492

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 644 H*RSYFSFLVHTVSSSLYSVLLFCPVRWLFVISAFFSSSKSVPISLTSVRISAPFP-SLG 468
           H R Y++ +VH   + L+ +L  C   +   ++   ++S S P  +    +S+P P    
Sbjct: 266 HHRQYWTSIVHNHKNGLFYLLRHCGSIFSLDLTGGGAASSSSPSPVARTVLSSPSPHQYS 325

Query: 467 SAPFPTRWGSIS 432
           S P PT++ +++
Sbjct: 326 SGPKPTQYLAVT 337


>03_06_0743 -
           35906119-35906247,35906747-35906869,35907841-35907954,
           35908092-35908148
          Length = 140

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 518 PISLTSVRISAPFPSLGSAPFPTRWGSISREEKYEDKEKLIRAIDDNV-IGKGNSFCG 348
           P S +  R +A FPS+   P P+R+ ++S   K +  +K+   + + + + +G +  G
Sbjct: 27  PTSASFSRQTASFPSIRLRPVPSRFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSG 84


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 536 SSSKSVPISLTSVRISAPFPSLGSAPFPT 450
           SS K VP++  + R  AP P+  +AP P+
Sbjct: 15  SSRKPVPVAAAAARRPAPSPAAAAAPAPS 43


>03_01_0205 +
           1621760-1621784,1622079-1622208,1622569-1622635,
           1622806-1622909,1623099-1623147,1623190-1623290,
           1623623-1623740,1624342-1624455
          Length = 235

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/82 (21%), Positives = 35/82 (42%)
 Frame = -3

Query: 536 SSSKSVPISLTSVRISAPFPSLGSAPFPTRWGSISREEKYEDKEKLIRAIDDNVIGKGNS 357
           S ++++ I L + ++ AP P + S   P  W +  R          +R + ++ +     
Sbjct: 16  SLNRNLGIDLPTWQVLAPLPPIDSPTVPLSWATRPRRIIGFYNFSFLRQLREDCLASPLD 75

Query: 356 FCGPYFTEIPIYLPYISQCFLI 291
                   +  + PY +QCFLI
Sbjct: 76  L-------LTFFFPYCTQCFLI 90


>01_01_0223 +
           1901898-1901983,1902079-1902154,1902256-1902308,
           1902400-1902887,1902983-1903143,1903234-1903531,
           1903619-1903773
          Length = 438

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 426 GKIRRQGEVDQSHRRQCYWQRQFVLWALLHGNTYISAVY 310
           G   R  EV  SH ++C    +  +++  HG  Y+++++
Sbjct: 293 GMTDRMWEVTTSHAKKCVPGDKVYMYSTQHGTVYVNSIF 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,144,914
Number of Sequences: 37544
Number of extensions: 392894
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)