Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2o18
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical pr... 32 0.34
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 32 0.45
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 31 1.0
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 31 1.0
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 31 1.0
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 31 1.0
Z68298-8|CAA92605.3| 449|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81463-3|CAB03847.1| 307|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 4.2
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 4.2
U80029-12|AAB37591.1| 456|Caenorhabditis elegans Hypothetical p... 28 7.3
>U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical
protein R08E3.4a protein.
Length = 447
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = -3
Query: 506 TSVRISAPFPSLGSAPFPTRWGSISREEKY-------EDKEKLIRAI-DDNVIGKGNSFC 351
+SV +SAP PS S P S+S EK ED+E ++ I ++N++ K + FC
Sbjct: 378 SSVSVSAPSPSEQSHSPPANESSLSLTEKEKSPTPEKEDEENVVCVIANNNLLLKMSPFC 437
Query: 350 GPYF 339
P+F
Sbjct: 438 LPFF 441
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 378 CYWQRQFVLWALLHGNTYISAVYFSVFPYMKT-VVRKILVLTLRSSTVHN 232
CYW W GN Y + +YF F + T +VR +LV T+ N
Sbjct: 1502 CYWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVGKFEKLTIIN 1551
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 378 CYWQRQFVLWALLHGNTYISAVYFSVFPYMKT-VVRKILVLTL 253
CYW W GN Y + +YF F + T +VR +LV +
Sbjct: 1410 CYWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAVI 1452
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 378 CYWQRQFVLWALLHGNTYISAVYFSVFPYMKT-VVRKILVLTL 253
CYW W GN Y + +YF F + T +VR +LV +
Sbjct: 1444 CYWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAVI 1486
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 378 CYWQRQFVLWALLHGNTYISAVYFSVFPYMKT-VVRKILVLTL 253
CYW W GN Y + +YF F + T +VR +LV +
Sbjct: 1555 CYWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAVI 1597
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 378 CYWQRQFVLWALLHGNTYISAVYFSVFPYMKT-VVRKILVLTL 253
CYW W GN Y + +YF F + T +VR +LV +
Sbjct: 1474 CYWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAVI 1516
>Z68298-8|CAA92605.3| 449|Caenorhabditis elegans Hypothetical
protein F44D12.9 protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 417 RRQGEVDQSHRRQCYWQRQFVLWALLHGNTYISAVYFSVFPYMKT 283
R + +VD RQ YW+ + W L N Y+ V +FP M T
Sbjct: 248 RAEEKVDNPSIRQ-YWECFRMCWVQLFNNFYVYFVSLLIFPAMMT 291
>Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical
protein T07C5.1c protein.
Length = 523
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 390 HRRQCYWQRQFVLWALLHGNTYISAVYFSVFPYMKTVVRK-ILVLTLRSSTVHNAPAH*L 214
H Q W F L ALLHG+ ++A + Y ++ + +L+ + + +HNA H
Sbjct: 2 HYSQMRWMF-FCLTALLHGSFIVNAA--KILVYCPSISKSHVLLCSKYADLLHNA-GHDT 57
Query: 213 ISMVPTHHKV 184
+ +P++ K+
Sbjct: 58 VLFIPSYSKL 67
>Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical
protein T07C5.1b protein.
Length = 190
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 390 HRRQCYWQRQFVLWALLHGNTYISAVYFSVFPYMKTVVRK-ILVLTLRSSTVHNAPAH*L 214
H Q W F L ALLHG+ ++A + Y ++ + +L+ + + +HNA H
Sbjct: 2 HYSQMRWMF-FCLTALLHGSFIVNAA--KILVYCPSISKSHVLLCSKYADLLHNA-GHDT 57
Query: 213 ISMVPTHHKV 184
+ +P++ K+
Sbjct: 58 VLFIPSYSKL 67
>Z81463-3|CAB03847.1| 307|Caenorhabditis elegans Hypothetical
protein C06B8.4 protein.
Length = 307
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 61 ILIPIRLQVEENNL-NQRRIKQIGSV*EIVVPTLHKINSPRVYFMMSRY 204
ILI + ++ +++ N + + I S ++ + LH IN P+V+F + Y
Sbjct: 20 ILITLIIKKSSSSMANYKYLMLISSFLKVFIGVLHFINQPKVHFYQASY 68
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 433 EIDPHLVGNGALPREGNGALIRTDVSDIGTDLEEEKNAE 549
E P NG L G+ I+ + G D EEE+N E
Sbjct: 1330 ETSPENGSNGKLANGGDNLSIKNGIESNGNDGEEEENGE 1368
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 433 EIDPHLVGNGALPREGNGALIRTDVSDIGTDLEEEKNAE 549
E P NG L G+ I+ + G D EEE+N E
Sbjct: 1330 ETSPENGSNGKLANGGDNLSIKNGIESNGNDGEEEENGE 1368
>U80029-12|AAB37591.1| 456|Caenorhabditis elegans Hypothetical
protein T20D4.6 protein.
Length = 456
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 442 PHLVGNGALPREGNGALIRTDVSDIGTD 525
P +G G P G G+L TD S+ GTD
Sbjct: 351 PTPIGEGVAPPPGYGSLPMTDDSEKGTD 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,482
Number of Sequences: 27780
Number of extensions: 360450
Number of successful extensions: 888
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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