Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o17
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    28   1.2  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    27   3.7  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.4  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.5  

>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 379 FPYLFADS-LRGYSSYARTGLRSS-TICLK*MQYATCAGLVNSYLRCRLIQMRIG 537
           FP++  DS L  Y+++ +  L +S T  L   + +TC  +V ++LR  ++  +IG
Sbjct: 665 FPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIG 719


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
 Frame = +3

Query: 399 QPKRLFQLR---PDGTSKFDHMFEVDAVRYLRWPS*FVFAMSANTNENWLLVEWSDGGRD 569
           +P+R  +L    P  T K D++ E  A     +P   + A+  N   N+  ++ S GGRD
Sbjct: 180 EPRRSTELPSKIPSSTPKDDNVQESPA-----FPDENITALQKNV-ANFTSIKDS-GGRD 232

Query: 570 VIYIKSVLEPN---VQELKVGVLITANRKG-EPQKGKLIDRANERKSLD 704
            +YI+++ +P    VQ  K    I  +++  + ++ K I + N+  S D
Sbjct: 233 NLYIQTISKPRRSYVQNNKSEQTIKPSKQNKQKEEKKTISQGNKPNSRD 281


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 373 MVEVLKTTYQSKHRFCVKYTANDNETKFTHSP 278
           M E+L  T+  K  FC  +  N  E+ F + P
Sbjct: 1   MHEILTVTFGRKSNFCWTHFWNTQESYFVYDP 32


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 339 NTDSVLSILPTTTRLNSHIRHTNSIPN*YL 250
           N +++L+   +T   NSH+RH  +IP  +L
Sbjct: 160 NDNTLLNRQVSTEEWNSHLRHLLNIPKCFL 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,295
Number of Sequences: 5004
Number of extensions: 55230
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)