Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o17
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0113 + 27767826-27768284                                         32   0.55 
06_03_0028 + 15659824-15661266                                         29   2.9  
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420     29   5.1  
11_01_0790 + 6617659-6619593,6619696-6620106                           28   6.7  
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285...    28   6.7  

>05_07_0113 + 27767826-27768284
          Length = 152

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +3

Query: 498 FVFAMSANTNENWLLVEWSDGGRDVIYIKSVLEPNVQELKVGVLITANRKGEPQKGKLID 677
           FV A      +N L++  + G  D+   +  L   + E+ +GV +  NRK  P K +  D
Sbjct: 30  FVDASGRVAKKNALVIAATTGADDIN--RPFLVRLLSEIGLGVRVEDNRKRRPAKTRRED 87

Query: 678 RANERKSLDARLKEWTRPV 734
            A  R+    R   W R +
Sbjct: 88  WAGNRRGRQLRGDGWQRSI 106


>06_03_0028 + 15659824-15661266
          Length = 480

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 451 WSNFEVPSGRSWNSLLGCQRIDKEKNMVEVLKTTYQSKHRFCVKYTAND 305
           W     P G  W     C R D +  M   L+  Y+ KHR+ V + + D
Sbjct: 419 WDRVLRPGGLLWVDKFACARKDLDDYMYMFLQFRYK-KHRWVVSFKSRD 466


>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
          Length = 433

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 537 LLVEWSDGGRDVIYIKSVLEPNVQELKVGVLITANRKGEPQKGKLIDRAN 686
           L+++W DG   V    +   P   +L+ G +  AN+ G P K  +++ +N
Sbjct: 309 LILDWFDGSMKVSTSSNAFYPQGGDLRQGTM--ANQGGGPSKHIMVEASN 356


>11_01_0790 + 6617659-6619593,6619696-6620106
          Length = 781

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 525 NENWLLVEWSDGGRDVIYIKSVLEPNVQELKVGVLITANR 644
           N  +L + W   G D + +  +  PN+  L++  +I+ANR
Sbjct: 650 NLRYLALSWCQLGEDPLRVLGLHVPNLTYLRLNSMISANR 689


>06_03_0729 +
           23927656-23927661,23927774-23927923,23928316-23928567,
           23929072-23929209,23931213-23932730
          Length = 687

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 709 RASNDLRSFARSMSFPFCGSPFLFAVIRT 623
           R  N LR+FARS+  PF  +P L +   T
Sbjct: 451 RTGNRLRAFARSIHLPFHFTPLLLSCATT 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,551
Number of Sequences: 37544
Number of extensions: 330114
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)