Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o17
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    29   4.5  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    29   4.5  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    29   4.5  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    29   4.5  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    29   4.5  
J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV) co...    29   4.5  
AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 677 IDELSFLRLAFPIRRYQNADLQFLNIRFQHRFDINDIATTVTPLHE 540
           ID+ SF  +A+      NA++ F N+R ++++     AT    + E
Sbjct: 605 IDDFSFNEMAYQFAEIVNAEIDFNNLRKKYKYQKGSTATAKKMISE 650


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 389  YSLTA*EAIPATPGRDFEVRPYV*SRCSTLLALA*LIRI 505
            Y L+  EAIP  P  + E+ PY+ SRC+   A A  I +
Sbjct: 1608 YWLSTSEAIPMMPVNEREIEPYI-SRCAVCEAPANTIAV 1645


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 389  YSLTA*EAIPATPGRDFEVRPYV*SRCSTLLALA*LIRI 505
            Y L+  EAIP  P  + E+ PY+ SRC+   A A  I +
Sbjct: 1607 YWLSTSEAIPMMPVNEREIEPYI-SRCAVCEAPANTIAV 1644


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
            isoform a protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 389  YSLTA*EAIPATPGRDFEVRPYV*SRCSTLLALA*LIRI 505
            Y L+  EAIP  P  + E+ PY+ SRC+   A A  I +
Sbjct: 1607 YWLSTSEAIPMMPVNEREIEPYI-SRCAVCEAPANTIAV 1644


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
            isoform b protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 389  YSLTA*EAIPATPGRDFEVRPYV*SRCSTLLALA*LIRI 505
            Y L+  EAIP  P  + E+ PY+ SRC+   A A  I +
Sbjct: 1608 YWLSTSEAIPMMPVNEREIEPYI-SRCAVCEAPANTIAV 1645


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
            protein.
          Length = 1795

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 389  YSLTA*EAIPATPGRDFEVRPYV*SRCSTLLALA*LIRI 505
            Y L+  EAIP  P  + E+ PY+ SRC+   A A  I +
Sbjct: 1644 YWLSTSEAIPMMPVNEREIEPYI-SRCAVCEAPANTIAV 1681


>J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV)
           collagen protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 389 YSLTA*EAIPATPGRDFEVRPYV*SRCSTLLALA*LIRI 505
           Y L+  EAIP  P  + E+ PY+ SRC+   A A  I +
Sbjct: 110 YWLSTSEAIPMMPVNEREIEPYI-SRCAVCEAPANTIAV 147


>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 695 LAFIC-TIDELSFLRLAFPIRRYQNADLQFLNIRFQH 588
           L F+C ++D L     A PIRR  N+ ++F+  R QH
Sbjct: 424 LEFLCKSVDVLLPPAYAEPIRRNVNSAMRFIKDRLQH 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,716,790
Number of Sequences: 27780
Number of extensions: 303809
Number of successful extensions: 655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)