Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o15
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356...    30   1.8  
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463...    29   4.1  
01_02_0054 - 10677564-10677671,10679605-10680264                       29   5.5  
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112...    28   7.2  
04_04_1395 + 33219711-33220629,33220750-33220787                       28   7.2  
04_04_0542 - 26104362-26104607,26104788-26105130,26107176-26107663     28   9.6  

>02_05_0756 -
           31534011-31534141,31534235-31535338,31535448-31535692,
           31535789-31535940,31536051-31536158
          Length = 579

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = +1

Query: 169 LRKEGELTKEIILSTKEK----HGVPVTSRLFSHHTLASVRKLSFYFPYNLPDDSLDFIL 336
           +R  G  T ++ILS +E     H      R   H  +    K    FP+  PD  +  IL
Sbjct: 109 IRPGGNFTYQVILSEEEGTLWWHAHSDFDRATVHGAIVIHPKRGTTFPFKKPDKEIPVIL 168

Query: 337 TSKYNHSTEQFADKVDV 387
              +N   E   DK  +
Sbjct: 169 GEWWNDDIEHVLDKAQL 185


>10_08_0139 +
           15145310-15145622,15145820-15145881,15145975-15146355,
           15146413-15146929,15147031-15147161
          Length = 467

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
 Frame = +1

Query: 169 LRKEGELTKEIILSTKEK----HGVPVTSRLFSHHTLASVRKLSFYFPYNLPDDSLDFIL 336
           +R  G  T ++IL  +E     H      R   H  +    K    FP+N PD  +  IL
Sbjct: 45  IRPCGNFTYQVILFEEEGTLWWHAHSDFDRATVHGAIVIHPKHGTTFPFNKPDKEIPIIL 104

Query: 337 TSKYNHSTEQFADK 378
           +  +N   E   D+
Sbjct: 105 SEWWNDDVENVLDE 118


>01_02_0054 - 10677564-10677671,10679605-10680264
          Length = 255

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 424 ARSRNRSSLAAGTRRLYPQIAPSSDCIWTLK*SPGC 317
           A S  RS  +A + RLYPQ+AP  D  +  +    C
Sbjct: 103 AHSFGRSHCSAFSFRLYPQVAPDMDAAYAAQLRARC 138


>11_04_0137 +
           13909204-13909315,13910002-13910999,13911058-13911267,
           13911522-13912056,13912154-13912461
          Length = 720

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 433 RNTCDKLPSSGVPMGHPLRRGGIHERRSPFSVKLMNSGVHSSQTNPGFSRQPA 591
           R+  D + +SG     PL R    +R  P S +      H+S   P F   PA
Sbjct: 491 RSAADVVQTSGRRPSPPLPRRSSVDRSGPSSSRRGYEAAHTSHDRPSFQLTPA 543


>04_04_1395 + 33219711-33220629,33220750-33220787
          Length = 318

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 515 DRRS*IPPRLKG-WPIGTPLLGNLSQVFRSRRQVSQPIVSGCRNTSTLSAN 366
           D  S +P +L G WP G P  G+L+   R  R V+     GC   + L AN
Sbjct: 95  DSSSSLPRQLNGSWPAGLPANGSLAVSTRHNRFVAM----GCNLLANLVAN 141


>04_04_0542 - 26104362-26104607,26104788-26105130,26107176-26107663
          Length = 358

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +1

Query: 151 KKLLPDLRKEGELTKEIILSTKEKHGVPVTSRLFSHHTLASVRKLSFYFPYNLP 312
           ++L+ ++R+E      +   TKEK G+   S  + + T  S+R LS+   +++P
Sbjct: 92  RELMEEMRREQARLFRLPFETKEKAGLLNGSYRWGNPTATSLRHLSWSEAFHVP 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,178,412
Number of Sequences: 37544
Number of extensions: 380899
Number of successful extensions: 952
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)