Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o10
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.4  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    27   3.4  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   5.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   5.9  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   5.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.8  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 242 PASIVPRKLDF---SNLDDDDGIRDESQAPVS 328
           P S+ P KL F   SN+D +D   D S  PVS
Sbjct: 198 PNSLSPTKLSFLSTSNIDPEDLTEDNSILPVS 229


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 539 SLPPDELDESRLTVRRPIANINPFTPDGQALNKKKRALSK 658
           S+ PDE +  + TVRR +    P +   Q ++ + RAL+K
Sbjct: 48  SMSPDEKNLKKSTVRRKLRKSKPNSSSNQ-VSSRTRALTK 86


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 382 HSKDALREVFDT-DSSSAQDET--VPAQDQRANRNAIRLEPPPPSA 510
           H +    +V D+ DSSS  DE   + ++ ++A+++  +   PPPSA
Sbjct: 145 HGQKNTSDVDDSSDSSSDVDEETLIVSKSKKAHKDIPKFSAPPPSA 190


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
 Frame = +2

Query: 257 PRKLDFSNLDDDDGIRDESQAP-------VSHSPPYK--RVRALRLFDSPH 382
           P  +D SNL+  + + +E Q+P       V    PY   R+ AL LF   H
Sbjct: 613 PLAVDLSNLESKEAVSEEIQSPQRLSRSKVFRKDPYSCVRILALELFCCSH 663


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 212 NIFSDNLSPIPASIVPRKLDFSNLDDDDGIRDESQAPVSHSPP 340
           +I+S  +S I  +       FSN+DD  GI D     V   PP
Sbjct: 241 DIWSLGISIIELATQELPWSFSNIDDSIGILDLLHCIVQEEPP 283


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 610  ERIDVGNRTPYGQPGLVQFVRG*TAERAVVVTRWRMEVVARA*WHSCLHVDLGR 449
            E + +GN   YG      F+ G  AER  V     + VV     H C ++  GR
Sbjct: 1411 ENMIIGNVCLYGATSGHAFISGVAAERFAVRNSGAIAVVEGVGDHGCEYMTGGR 1464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,840
Number of Sequences: 5004
Number of extensions: 58264
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)