Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o07
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    31   0.22 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    28   1.2  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   3.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.6  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   3.6  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   4.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   4.8  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   6.3  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   8.4  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   8.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.4  

>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +2

Query: 398 IDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTT--STRVIVEKRSQKTHTTVSSHSVKKQ 571
           IDKS P   + +  +TN  ++  G    SN+TT     +I   +     + V     KK 
Sbjct: 235 IDKSLPSSEMDSNLQTNPSSISKGKKNNSNNTTQKGPNIISSPQVINASSPVRKAGKKKS 294

Query: 572 QK---IDNLVNGSGDLNHNH-EDDISAVKHSLPQS 664
           +K      L + S D ++N   D    V  S+P+S
Sbjct: 295 KKALPTSPLSSSSPDASYNSVSDSFHTVAASVPES 329


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 470 YAKVSNSTTSTRVIVEKRSQKTHTTVSSHSVKKQQKIDN--LVNGSGDLNHNHEDDISAV 643
           YA +    T     +E+ S     +  + +  ++  ++N  L N +  LN NH DD++  
Sbjct: 296 YATLLRKFTDQTKKIEELSLAASRSSENENTIRRLALENHELKNSNNQLN-NHIDDLTRE 354

Query: 644 KHSLPQSNGEIGTD 685
           KH +  SN   G +
Sbjct: 355 KHLIALSNNPKGDE 368


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/70 (20%), Positives = 31/70 (44%)
 Frame = +2

Query: 350 PGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQ 529
           P  +  MF        ++ +    P HN +  N +TLP      +++ TS    ++  +Q
Sbjct: 408 PAVLESMFRPSGNNNLLNLNGIFHPDHNAQTENGQTLPENTDDTNSNATSAVPNLQNLNQ 467

Query: 530 KTHTTVSSHS 559
           +   T+ +++
Sbjct: 468 QNAVTMGTNT 477


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 386 TKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTHTTVSSHSV 562
           T A    S PL  +++T  T+  + P   A   NSTTST V     S  T + + + SV
Sbjct: 365 TTATSASSTPLTSVNSTSATSASSTPLTSA---NSTTSTSVSSTAPSYNTSSVLPTSSV 420



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 386 TKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTHTTVSSHSV 562
           T A    S PL  +++T  T+  + P   A   NSTTST V     S  T + + + SV
Sbjct: 479 TTATSASSTPLTSVNSTSATSASSTPLTSA---NSTTSTSVSSTAPSYNTSSVLPTSSV 534


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = +2

Query: 395 GIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTHTTVSSHSVKKQQ 574
           G+  + P  PI+    +++      + +VS S     VI +  ++KT  T  SH ++ Q 
Sbjct: 506 GLSPNAPHPPINEQSNSSQP-----FYRVSPSIVPLNVIRKLTNRKTSFT-DSHILRLQD 559

Query: 575 KIDNLVNGSGDLNHNHED 628
           +++ L N    +N  +ED
Sbjct: 560 EVNQLRNELDLVNKRNED 577


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 338 VPHQPGKVRQMFEER-RTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIV 514
           V   P    +MF +  R  A I  +     + NTE      +PN +AK ++S        
Sbjct: 372 VAQTPSVKPEMFPKTARPFAAIHANASSTQLRNTENITHPGIPNHFAKTTSSVFDEPPAT 431

Query: 515 EKRSQKTHTTVSSHS 559
             R  +T + V+ HS
Sbjct: 432 --RMPQTRSPVNDHS 444


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 661 LWKRMFNSANVIFVIVVEITGAVHQIVYFLLFLNAMRAD 545
           LW+++    +V F I VE +  +  I  F LF++ M  D
Sbjct: 662 LWEKLLEYVSVCFFINVEESVRISWISQFQLFIDEMFPD 700


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 132 TRKNDETNKKNKIQTSLQNCIIN 64
           TR   +T +KNKI+ SLQ+  +N
Sbjct: 287 TRSEPQTPRKNKIRDSLQSSPLN 309


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 536 HTTVSSHSVKKQQKIDNLVNGSGDLN 613
           H+TV++ S   QQK +N  N SGD+N
Sbjct: 87  HSTVANQSW--QQKGENQENNSGDIN 110


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = +2

Query: 191 QARFQQKQLQERELKIASLYEAQQARAL----DRVRQSPSNGVSTASSQQPTPVPHQPGK 358
           +AR    QL +     AS  E+ Q   L    +RV +     + +  S + TPV      
Sbjct: 476 EARPLHYQLNQMYNSSASEAESDQELLLSSGDERVERGKIGSIKSVKSDEATPVFSDTSD 535

Query: 359 VRQMFEERRTKAGIDK 406
               F   RTK+ I K
Sbjct: 536 ENDKFHRFRTKSKISK 551


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 521 RSQKTHTTVSSHSVKKQQKIDNLVNGS 601
           R QK H  +S    K Q +I+N+  GS
Sbjct: 423 RGQKLHLEISKIQKKYQNQIENMKKGS 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,982
Number of Sequences: 5004
Number of extensions: 49708
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)