Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2o01
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   3.0  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 132 RWETTHGHRCHQTYRKQARSDNPER-P*RVLREILRTSRNA 251
           RW   +G+  +  +RK   +DN      R   E  R S+N+
Sbjct: 375 RWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSRNSKNS 415


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVY 342
           GP    +E  +W    H+P H  F + +  F   V+
Sbjct: 39  GPEQQMWEPQMWHHHSHMPPHSVFAANNAEFPEFVH 74


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVY 342
           GP    +E  +W    H+P H  F + +  F   V+
Sbjct: 39  GPEQQMWEPQMWHHHSHMPPHSVFAANNAEFPEFVH 74


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 269 HTPPSYGVPGGP 234
           H PP +  PG P
Sbjct: 213 HRPPHFAFPGAP 224


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 293 SGRCTRTLHTPPSYGVPGGPKNFTQNSLRPLRI 195
           SG  +     PP+    G P +   N+  PL I
Sbjct: 25  SGMTSPAAAPPPATTSSGSPASVASNASAPLHI 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,294
Number of Sequences: 336
Number of extensions: 2839
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)