Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2o01
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 202 4e-53
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 99 3e-22
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 96 5e-21
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 88 1e-18
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 85 9e-18
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 81 1e-16
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 79 4e-16
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 79 8e-16
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 78 1e-15
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 69 5e-13
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 67 3e-12
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 60 2e-10
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 40 2e-04
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 36 0.005
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 4.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 7.6
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 7.6
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 7.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 10.0
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 10.0
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 25 10.0
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 10.0
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 10.0
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 10.0
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 202 bits (493), Expect = 4e-53
Identities = 89/153 (58%), Positives = 120/153 (78%), Gaps = 1/153 (0%)
Frame = +1
Query: 118 MSSPSAGKRRMDTDVIKLIESKHEVTILS-GLNEFCVKFFGPPGTPYEGGVWRVRVHLPD 294
MSSP +RR++TDV+KL+ S +EVT+++ + EF V+F GP TPY GG+W+V V LP
Sbjct: 1 MSSP---RRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPS 57
Query: 295 HYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSNIFESFLPQLLTYPNPI 474
YP+KSPSIGF+N+++HPNIDE+SG+VCLDVINQ W+ ++D+ NIFE FLPQLL YPN
Sbjct: 58 EYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNAS 117
Query: 475 DPLNGDAAAMYLHKPEEYKKKVCDYVRKFATEE 573
DPLNG+AAA+ L +P Y KV DY+ ++A +E
Sbjct: 118 DPLNGEAAALLLREPNTYYAKVRDYIARYANKE 150
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 99 bits (238), Expect = 3e-22
Identities = 44/134 (32%), Positives = 73/134 (54%)
Frame = +1
Query: 193 TILSGLNEFCVKFFGPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGT 372
TI ++ F GP GTPYEGG + V + +P YPF+ P + F K+YHPN+ +G
Sbjct: 28 TINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGA 87
Query: 373 VCLDVINQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKKKVCDYV 552
+CLD++ W+ +Y + + S L LL P P +P + A +YL +++ + ++
Sbjct: 88 ICLDILKDQWSPVYTMKSALIS-LQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWT 146
Query: 553 RKFATEEALLEKDA 594
+A A ++ DA
Sbjct: 147 SSYAAAPAGVDLDA 160
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 95.9 bits (228), Expect = 5e-21
Identities = 42/110 (38%), Positives = 65/110 (59%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALY 414
GP +PY GGV+ + +H P YPFK P + F ++YHPNI+ +G++CLD++ W+
Sbjct: 39 GPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS-NGSICLDILRDQWSPAL 97
Query: 415 DLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKKKVCDYVRKFA 564
+S + S + LLT PNP DPL + A +Y Y+ ++ RK+A
Sbjct: 98 TISKVLLS-ICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYA 146
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 87.8 bits (208), Expect = 1e-18
Identities = 40/100 (40%), Positives = 62/100 (62%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALY 414
GP T YEG +++ + P +YP+ P+I F + ++HPN+D +SG +CLD++ W+A+Y
Sbjct: 67 GPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVD-MSGNICLDILKDKWSAVY 125
Query: 415 DLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKK 534
++ I S L LL PN PLN AA ++ P EYK+
Sbjct: 126 NVQTILLS-LQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 85.0 bits (201), Expect = 9e-18
Identities = 37/119 (31%), Positives = 65/119 (54%)
Frame = +1
Query: 208 LNEFCVKFFGPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDV 387
L F + GP + YEGG + + + LPD YP P++ F+ K+YHPN+D++ G +CL
Sbjct: 31 LRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKL-GRICLST 89
Query: 388 INQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKKKVCDYVRKFA 564
+ + W+ + + S + L+ PNP DPL+ D A ++ + ++ +K+A
Sbjct: 90 LKKDWSPALQIRTVLLS-IQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 81.0 bits (191), Expect = 1e-16
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = +1
Query: 253 YEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSNIF 432
Y+GG ++ R+ + D+YP P + +NK+YHPNID + G VCL+++ Q W + +L++I
Sbjct: 65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNID-IEGNVCLNILRQDWNPVLNLNSIL 123
Query: 433 ESFLPQLLTYPNPIDPLNGDAAAMYLHK-PEEYKKKV 540
L L PN DPLN +AAA LHK P+ + +V
Sbjct: 124 VG-LQFLFLSPNAEDPLNKEAAA-DLHKDPQGFASRV 158
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 79.4 bits (187), Expect = 4e-16
Identities = 34/102 (33%), Positives = 60/102 (58%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALY 414
GP TP+E G +++ + + YP K P + F++ ++HPN+ +G +CLD++ W+ Y
Sbjct: 42 GPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNV-YANGELCLDILQNRWSPTY 100
Query: 415 DLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKKKV 540
D++ I S + LL PN P N +AA ++ +EY ++V
Sbjct: 101 DVAAILTS-IQSLLNDPNNASPANAEAAQLHRENKKEYVRRV 141
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 78.6 bits (185), Expect = 8e-16
Identities = 34/90 (37%), Positives = 51/90 (56%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALY 414
GP TPYEGG W + +H+ + YP PS+ F K+ HPNI +G VC+D++ W+ +
Sbjct: 43 GPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAW 102
Query: 415 DLSNIFESFLPQLLTYPNPIDPLNGDAAAM 504
L + + + L Y + PLN DAA +
Sbjct: 103 SLQSACLAIISLLSNY-DASSPLNVDAAKL 131
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 78.2 bits (184), Expect = 1e-15
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVI-NQAWTAL 411
GP + Y GG + + P YPF+ P+I F ++YHPN D G VCL ++ Q +
Sbjct: 45 GPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDS-EGNVCLAILKQQVFKPS 103
Query: 412 YDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKKKVCDYVRKFA 564
L ++ E L QLL PNP DPL A Y + + K DYV +FA
Sbjct: 104 IKLRSVLEQIL-QLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 69.3 bits (162), Expect = 5e-13
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Frame = +1
Query: 214 EFCVKFFGPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVIN 393
E+ V GP T YEGG + + P YP P + F +++HPN+ +G VC+ +++
Sbjct: 37 EWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNV-HPNGEVCISILH 95
Query: 394 QAWTALYDLSNIFESFLP------------QLLTYPNPIDPLNGDAAAMYLHKPEEYKKK 537
Y + E +LP +L+ PN P N DAA + P+E+KK+
Sbjct: 96 PPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKR 155
Query: 538 VCDYVRK 558
V VR+
Sbjct: 156 VRRLVRR 162
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 66.9 bits (156), Expect = 3e-12
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVIN--QAWTA 408
G P T +EGG++++ + P+ YP + P F ++HPN+ SGTVCL ++N + W
Sbjct: 47 GKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV-YPSGTVCLSILNEEEGWKP 105
Query: 409 LYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKKKVCDYVRKFA 564
+ I + LL PN P +A M+ EY+K+V R+ A
Sbjct: 106 AITIKQILLG-IQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 60.5 bits (140), Expect = 2e-10
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVI-------- 390
GP GTP+EGG++ + P YP P++ F + +HPN+ + GTVC+ ++
Sbjct: 44 GPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYK-DGTVCISILHAPGDDPN 102
Query: 391 -----NQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEYKKKVCDYVR 555
++ W+ + + I S + +L PN N DA M+ EEY + V R
Sbjct: 103 MYESSSERWSPVQSVEKILLSVM-SMLAEPNDESGANIDACKMWREDREEYCRVVRRLAR 161
Query: 556 K 558
K
Sbjct: 162 K 162
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +1
Query: 235 GPPGTPYEGGVWRVRVHLPDHYPFKSPSI 321
GPP TPYEGG + + P YPFK P+I
Sbjct: 43 GPPDTPYEGGQYHGTLIFPPDYPFKPPAI 71
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +1
Query: 208 LNEFCVKFFGPPGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDV 387
L+++ GP + +E ++ +++H +YP P + F++++ P +D +G V
Sbjct: 38 LSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHK 97
Query: 388 IN--QAWTALYDLSNIFESFLPQLLTYPN 468
I+ + W Y + + ++ + N
Sbjct: 98 IDCLRHWKREYSMETVLLDLKKEMASSSN 126
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 249 RSWRSEEFHAELVK-AAQDCHFVLAFDKFDDIGVH 148
+ W+ E+ E+V+ AA +C V + FD +G+H
Sbjct: 288 KGWKEVEY--EVVRDAANNCITVCNMENFDPLGIH 320
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 290 PIITPSSLRPSVS*IRSTTPT*MRCRGPCVLTSSTRRGLPFMT 418
P+ PSS PSVS RS+ P+ P +SS P T
Sbjct: 1238 PVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPART 1280
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 301 PFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQ 396
PF S + F N +PN D V+ LDV+++
Sbjct: 218 PFSSSPLHFTNSSPNPNSDIVTPDKQLDVVSE 249
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 517 PEEYKKKVCDYVRKFATEEALLEKDAITGVGASANKASNGNDSDSESSMSDF 672
PE+++ +V D+ + L +I+ S A++GN SS S++
Sbjct: 271 PEDFEPQVHDHENQTQLNHHLDNNSSISSHNPSLETANDGNQETVSSSNSNY 322
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 61 TRNSLETNFSSTTSSQKNN 5
T N LET + STT+ Q NN
Sbjct: 370 TENILETAYESTTARQVNN 388
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 334 KVYHPNIDEVSGTVCLDVINQAWTALYDLSNIFESFLPQLLTYPNPIDP 480
K++ P + E+S +CL + W+ + N F P L +P P
Sbjct: 1758 KMHIPGVIELSNHLCLTASSTEWSLIKHWCNFFTETGP-LCDFPRAYYP 1805
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 313 PSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSNIFESFLPQL 453
PSI F NKV N+ V+ TV ++ WT + +++ LP++
Sbjct: 691 PSIKFSNKVVKDNV--VNVTVTVEHPGLIWTVVSFDADVLSWSLPEV 735
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 160 VIKLIESKHEVTILSGLNEFCVKFFGPPGTPYEG 261
V +L+E+ HEV L E K GTPY G
Sbjct: 17 VRQLLEAGHEVVGLVRSEENAAKLRAAGGTPYIG 50
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 109 ITKMSSPSAGKRRMDTDVIKLIESKHEVTILSGLNEFCVKFFGPP 243
I ++ S + +D+D+IKLIE K + + + K FG P
Sbjct: 1074 INSLTRVSLDEDALDSDIIKLIEEK--ASTIDSTYQVPKKVFGVP 1116
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +3
Query: 123 VTERWETTHGHRCHQTYRKQARSDNPERP*RVLREILRTSRNAIRRWCVESTRAPSRSLP 302
+ ER T G+R H T + RS + + I V ST P+ SLP
Sbjct: 152 IPERLSTKKGNRSHTTSNAKRRSQKAASSISTTNVVSSDPKKYIPE-TVPSTPQPASSLP 210
Query: 303 LQVS 314
+ S
Sbjct: 211 IPSS 214
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 487 GDAAAMYLHKPEEYKKKVCDYVRKFATEEALLEKDAITGVGASANKASNGNDSDSES 657
GDA Y E+Y+ ++ D RK E L + + A + ASN + + S++
Sbjct: 107 GDATRAY----EQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASKN 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,262
Number of Sequences: 5004
Number of extensions: 48615
Number of successful extensions: 193
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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