Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n21
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   3.8  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   3.8  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   6.6  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 615 YTYKFINDQGFFFSYLLYH 671
           +TYKF+ND+G F+ Y  +H
Sbjct: 204 HTYKFVNDKGEFY-YCKWH 221


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 556 SFSSDLLSGSRFLSGGRFCEALLLQGPVLATHPG 455
           SF S      R+  G RFC + L +G ++   PG
Sbjct: 500 SFLSRAFGSIRYSGGRRFCFSALAEGAIVLILPG 533


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 167 YELVRVVLRGVNIVEKYRIVCWSSSVVLSLRFKFWILANETARDFDDLNNI--IIIMICV 340
           Y L++++L  +   +       SSS+ LSL FK   + +   ++ + LNN   III++ V
Sbjct: 347 YLLLQLILENIKSADLAETAA-SSSLHLSLYFKEHPIVHAQYQEINKLNNSEQIIIVLSV 405

Query: 341 K*TNNLPITHQTRG 382
                L + + + G
Sbjct: 406 LSDGRLNVDYMSSG 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,360
Number of Sequences: 5004
Number of extensions: 60274
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)