Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2n20
(241 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006624-7|AAF39787.1| 642|Caenorhabditis elegans Hypothetical ... 75 5e-15
AF068719-3|AAM45352.1| 603|Caenorhabditis elegans Hypothetical ... 73 4e-14
AF068719-2|AAC17783.1| 633|Caenorhabditis elegans Hypothetical ... 73 4e-14
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 70 3e-13
Z99284-1|CAB16541.2| 607|Caenorhabditis elegans Hypothetical pr... 58 1e-09
U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical pr... 39 4e-04
AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical ... 37 0.002
AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical ... 37 0.002
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 28 0.77
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 28 0.77
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 27 1.3
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 27 1.3
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 27 1.8
AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical... 27 1.8
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 26 3.1
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 25 5.4
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 25 7.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 25 7.2
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 25 7.2
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 25 7.2
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 25 7.2
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 25 7.2
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 25 7.2
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 25 9.5
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 25 9.5
AY313178-1|AAP79303.1| 569|Caenorhabditis elegans myotubularin-... 25 9.5
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 25 9.5
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 25 9.5
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 25 9.5
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 25 9.5
AC024770-4|AAT68891.1| 521|Caenorhabditis elegans Mtm (myotubul... 25 9.5
AC024770-3|AAK84604.1| 569|Caenorhabditis elegans Mtm (myotubul... 25 9.5
>AC006624-7|AAF39787.1| 642|Caenorhabditis elegans Hypothetical
protein C53D5.5 protein.
Length = 642
Score = 75.4 bits (177), Expect = 5e-15
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
IL K G+AVD+AIA LFC G+ G+GGG T+Y+A+T V++AR AP A T
Sbjct: 120 ILLKGGNAVDSAIAALFCIGVMDTHSAGIGGGHFMTIYNATTKECTVIDAREIAPLAATE 179
Query: 182 NMYENA--SSTVGGLAIAVPGE 241
MY + S +G AIAVPGE
Sbjct: 180 EMYRDKWNQSRIGWKAIAVPGE 201
>AF068719-3|AAM45352.1| 603|Caenorhabditis elegans Hypothetical
protein H14N18.4b protein.
Length = 603
Score = 72.5 bits (170), Expect = 4e-14
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
+L + G+AVDA IA+L C G Q G+GGGF+ T+Y+ASTG + +NAR APAA T
Sbjct: 91 VLIEGGNAVDAMIASLLCIGTVNPQSSGIGGGFVMTLYNASTGMCQTINARETAPAAATE 150
Query: 182 NMY-ENASSTVGGL-AIAVPGE 241
M+ +N +V G +IA P E
Sbjct: 151 TMFVDNPKESVMGYKSIATPSE 172
>AF068719-2|AAC17783.1| 633|Caenorhabditis elegans Hypothetical
protein H14N18.4a protein.
Length = 633
Score = 72.5 bits (170), Expect = 4e-14
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
+L + G+AVDA IA+L C G Q G+GGGF+ T+Y+ASTG + +NAR APAA T
Sbjct: 121 VLIEGGNAVDAMIASLLCIGTVNPQSSGIGGGFVMTLYNASTGMCQTINARETAPAAATE 180
Query: 182 NMY-ENASSTVGGL-AIAVPGE 241
M+ +N +V G +IA P E
Sbjct: 181 TMFVDNPKESVMGYKSIATPSE 202
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 69.7 bits (163), Expect = 3e-13
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
IL K G+++DA+IA++FC G+ Q G+GGGFL T +D +G ++AR APAA +
Sbjct: 54 ILRKGGNSIDASIASMFCLGVVNPQSSGIGGGFLMTYFDQKSGDCYSIDARETAPAAASR 113
Query: 182 NMYENAS--STVGGLAIAVPGE 241
+M+ N S S G A PGE
Sbjct: 114 DMFLNDSDGSKYGFKAAGTPGE 135
>Z99284-1|CAB16541.2| 607|Caenorhabditis elegans Hypothetical
protein Y7A9A.1 protein.
Length = 607
Score = 57.6 bits (133), Expect = 1e-09
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
++ + G+AVDAAIA FC G+ G+GGG +Y + LN+R AP+ T
Sbjct: 89 VIIQGGNAVDAAIAATFCNGVVLPYATGIGGGDFIVIYLKEEKKCVFLNSRETAPSLATE 148
Query: 182 NMY--ENASSTVGGLAIAVPGE 241
MY + S+ G +I +PGE
Sbjct: 149 KMYVHDKDSAQFGYQSIGIPGE 170
>U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical
protein T19H12.6 protein.
Length = 619
Score = 39.1 bits (87), Expect = 4e-04
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
IL + G+AV+AAIA FC + LGGG + TV G + AR AP +
Sbjct: 238 ILVRGGNAVEAAIAASFCLMGAMPNKASLGGGLMMTV-KTKNGNATTIIARETAPMNADI 296
Query: 182 N-MYENASST-VGGLAIAVPG 238
+ + +N T VG A PG
Sbjct: 297 DELKKNPELTHVGPKASGTPG 317
>AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2a protein.
Length = 665
Score = 36.7 bits (81), Expect = 0.002
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
I E G+AVDA +AT FC G G G + ++ V++ R RAP
Sbjct: 333 IHETGGNAVDAMVATEFCISAVHPHTTGPGFGAVIVLHSKKKNGTFVIDGRERAPKNANK 392
Query: 182 NMY--ENASSTVGGLAIAVPG 238
N + + +G ++ VPG
Sbjct: 393 NTFVINPTIAHIGYSSMGVPG 413
>AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2b protein.
Length = 634
Score = 36.7 bits (81), Expect = 0.002
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 2 ILEKNGSAVDAAIATLFCEGISCAQCMGLGGGFLATVYDASTGRVRVLNARXRAPAAMTL 181
I E G+AVDA +AT FC G G G + ++ V++ R RAP
Sbjct: 283 IHETGGNAVDAMVATEFCISAVHPHTTGPGFGAVIVLHSKKKNGTFVIDGRERAPKNANK 342
Query: 182 NMY--ENASSTVGGLAIAVPG 238
N + + +G ++ VPG
Sbjct: 343 NTFVINPTIAHIGYSSMGVPG 363
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 144 STLTRPVLASYTVARNPPPSPMHCAQD-IPSQNNVAIAASTAEP 16
S + RPV+++ T +PPP P H + IP ++ + +++P
Sbjct: 488 SYIPRPVVSTSTSFSHPPPLPAHQSNSKIPRMSSASEQRKSSQP 531
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 144 STLTRPVLASYTVARNPPPSPMHCAQD-IPSQNNVAIAASTAEP 16
S + RPV+++ T +PPP P H + IP ++ + +++P
Sbjct: 504 SYIPRPVVSTSTSFSHPPPLPAHQSNSKIPRMSSASEQRKSSQP 547
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 216 PPTVDDAFSYMFRVMAAGARXLALSTLTRPVLASYTVARNPPPSPMHCAQDIPSQ--NNV 43
P + ++ ++ A A+ + L R + ++ PPP H QD+ + +++
Sbjct: 787 PELTQEELDHIAKITAMAAQDVQLPATQRSITHKVSLTPPPPPPSKHFEQDLTQEELDHI 846
Query: 42 AIAASTAE 19
A A A+
Sbjct: 847 ARIAEMAD 854
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 216 PPTVDDAFSYMFRVMAAGARXLALSTLTRPVLASYTVARNPPPSPMHCAQDIPSQ--NNV 43
P + ++ ++ A A+ + L R + ++ PPP H QD+ + +++
Sbjct: 3469 PELTQEELDHIAKITAMAAQDVQLPATQRSITHKVSLTPPPPPPSKHFEQDLTQEELDHI 3528
Query: 42 AIAASTAE 19
A A A+
Sbjct: 3529 ARIAEMAD 3536
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 105 ARNPPPSPMHCAQDIPSQNNVAIAASTAEPFF 10
A PPP P+H + + + ++ +T EP F
Sbjct: 2102 APTPPPQPIHRSTAEDNMQRIGLSRTTTEPEF 2133
>AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical
protein Y46G5A.10 protein.
Length = 732
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 76 MHGTRG--RVPSDRVRREHGTGEGTQRQXTSSRRHDPEHVRER 198
+H TRG + PSDRV + G T S H P + E+
Sbjct: 624 LHYTRGISKTPSDRVEKSRYLSRGVSTPHTPSEVHIPYNNPEK 666
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 140 PSPVPCSRRTRSLGTRPRVPCIARKISPHRTTSLSQHR 27
P P P S RT + + R P + PH + S + R
Sbjct: 3 PGPAPYSSRTSVMNSSGRNPMNYPSVPPHTSISAASRR 40
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Frame = -2
Query: 240 SPGTAIASPPTVDDAFSYMFRVMAAGARXLALSTLTRPVLASYTVARN----PPPSPMHC 73
+PG A S + + R A GA + L + + R PPP+P
Sbjct: 634 APGAASLSTEKLTQSSRKRARTCAVGAASGVTPVVASLTLQDHQLLRPHTHAPPPTPSRS 693
Query: 72 AQDIPSQNNVAIAAS 28
A PS I++S
Sbjct: 694 APSSPSSKKCEISSS 708
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 41 ATLFCEGISCAQCMGLGGGFLATVY 115
A +C G CA G+ GGF T Y
Sbjct: 1700 AETYCSG-QCASLTGIVGGFNVTTY 1723
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 41 ATLFCEGISCAQCMGLGGGFLATVY 115
A +C G CA G+ GGF T Y
Sbjct: 1700 AETYCSG-QCASLTGIVGGFNVTTY 1723
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 144 STLTRPVLASYTVARNPPPSPMHCAQDIPSQNNVAIAASTAEPFF 10
ST T +A+ T + +P P P+ Q +PS ++ A AS P F
Sbjct: 225 STTTTTTIATTTTSTSPAPVPV--QQFVPSFSDGASDASGPLPAF 267
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 127 RARVVHGR*EPAPESHALRARYPL 56
++R +HG+ PA E H L A Y +
Sbjct: 775 QSRKLHGKYNPAREEHNLSAAYAM 798
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 127 RARVVHGR*EPAPESHALRARYPL 56
++R +HG+ PA E H L A Y +
Sbjct: 773 QSRKLHGKYNPAREEHNLSAAYAM 796
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 127 RARVVHGR*EPAPESHALRARYPL 56
++R +HG+ PA E H L A Y +
Sbjct: 775 QSRKLHGKYNPAREEHNLSAAYAM 798
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 127 RARVVHGR*EPAPESHALRARYPL 56
++R +HG+ PA E H L A Y +
Sbjct: 773 QSRKLHGKYNPAREEHNLSAAYAM 796
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 143 VPSPVPCSRRTRSLGTRPRVPCIA---RKISPH 54
+P PV T + PR+PC+A +++S H
Sbjct: 635 LPLPVTSKPETAPMPRLPRIPCLAPITKQLSTH 667
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 143 VPSPVPCSRRTRSLGTRPRVPCIA---RKISPH 54
+P PV T + PR+PC+A +++S H
Sbjct: 688 LPLPVTSKPETAPMPRLPRIPCLAPITKQLSTH 720
>AY313178-1|AAP79303.1| 569|Caenorhabditis elegans
myotubularin-related protein MTM-9 protein.
Length = 569
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 152 WR*VPSPVPCSRRTRSLGTRPRVPCIARKISPHRTTS 42
WR + P+P R TR C RK++ R S
Sbjct: 271 WRYIQCPIPRQREIHDALTRMVDVCSERKVTSDRWVS 307
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 143 VPSPVPCSRRTRSLGTRPRVPCIA---RKISPH 54
+P PV T + PR+PC+A +++S H
Sbjct: 635 LPLPVTSKPETAPMPRLPRIPCLAPITKQLSTH 667
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 143 VPSPVPCSRRTRSLGTRPRVPCIA---RKISPH 54
+P PV T + PR+PC+A +++S H
Sbjct: 688 LPLPVTSKPETAPMPRLPRIPCLAPITKQLSTH 720
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 143 VPSPVPCSRRTRSLGTRPRVPCIA---RKISPH 54
+P PV T + PR+PC+A +++S H
Sbjct: 686 LPLPVTSKPETAPMPRLPRIPCLAPITKQLSTH 718
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 137 SPVPCSRRTRSLGTRPRVPCIARKISPHRTTSLSQHRQPSHS 12
+PVP ++ R+L PR SP + S S PS S
Sbjct: 199 APVPINKANRNLYRNPRGSLETPTDSPQKGFSSSTESSPSDS 240
>AC024770-4|AAT68891.1| 521|Caenorhabditis elegans Mtm
(myotubularin) family protein9, isoform b protein.
Length = 521
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 152 WR*VPSPVPCSRRTRSLGTRPRVPCIARKISPHRTTS 42
WR + P+P R TR C RK++ R S
Sbjct: 223 WRYIQCPIPRQREIHDALTRMVDVCSERKVTSDRWVS 259
>AC024770-3|AAK84604.1| 569|Caenorhabditis elegans Mtm
(myotubularin) family protein9, isoform a protein.
Length = 569
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 152 WR*VPSPVPCSRRTRSLGTRPRVPCIARKISPHRTTS 42
WR + P+P R TR C RK++ R S
Sbjct: 271 WRYIQCPIPRQREIHDALTRMVDVCSERKVTSDRWVS 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,602,718
Number of Sequences: 27780
Number of extensions: 99630
Number of successful extensions: 445
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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