Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n13
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    32   0.44 
11_06_0485 + 24133312-24133585,24136352-24136492,24136593-241367...    27   9.4  
06_03_1221 - 28514952-28518152                                         27   9.4  

>09_04_0501 + 18153252-18153453,18153973-18154224,18154809-18155015,
            18155198-18157046,18157334-18157381,18158222-18158291,
            18158380-18158475,18158583-18158621,18158714-18158924,
            18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 159  DDCAMNSRRKLNRQ*VAVDH--LETTKKYAKTKRGTVTRAV 43
            DDCAMNS   LN Q +A+D   +  + +Y++   GT+T A+
Sbjct: 1009 DDCAMNS-EMLNNQQLAIDEGTISLSSQYSQQLLGTLTHAL 1048


>11_06_0485 +
           24133312-24133585,24136352-24136492,24136593-24136742,
           24136837-24136955,24137062-24137146,24137218-24137264,
           24137422-24137520
          Length = 304

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 231 IFCGALLIVVPSMCRPYDPEDKSLKDVLPSSGQFEAF 341
           +F  A LI + S+  PY  +  + + +LP+S   E F
Sbjct: 194 LFADAGLICITSLISPYKSDRSACRKLLPNSSFIEVF 230


>06_03_1221 - 28514952-28518152
          Length = 1066

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 300 LKDVLPSSGQFEAFYPRETHGIP 368
           L+  +P+ GQF+AF PR+  G P
Sbjct: 647 LEGPIPTGGQFDAFPPRDFTGNP 669


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,797
Number of Sequences: 37544
Number of extensions: 275558
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)