Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n13
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-5|AAG24096.1|  330|Caenorhabditis elegans Serpentine re...    29   2.8  
Z83221-2|CAB05708.1|  444|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81530-3|CAB04307.1|   64|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z49132-2|CAA88982.1|   64|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF024503-5|AAG24096.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein246 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -2

Query: 446 VLHIHQRRVAVVVETTMSMSRSRRPVWYAVC 354
           ++ +++ R  ++   T   SR R+P+W+ +C
Sbjct: 110 IMAVYENRYFILFLKTSQWSRVRKPLWFTIC 140


>Z83221-2|CAB05708.1|  444|Caenorhabditis elegans Hypothetical
           protein C49A1.3 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 368 WYAV--CFSWIKRFELSARWQDIF*AFV 291
           WY +  C + I RF LSA  Q+IF +F+
Sbjct: 40  WYLIYLCIAGIYRFYLSAEQQEIFSSFI 67


>Z81530-3|CAB04307.1|   64|Caenorhabditis elegans Hypothetical
           protein F36D1.4 protein.
          Length = 64

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 339 FYPRETHGIPNGSSRPAHGHGSFYNYRNPALVDVKNAPAY 458
           + P   HG P G+  P +G    Y Y +PA V     P Y
Sbjct: 6   YSPYVAHGSPYGA--PMYGSPYGYGYASPAYVQPVGPPVY 43


>Z49132-2|CAA88982.1|   64|Caenorhabditis elegans Hypothetical
           protein ZK666.2 protein.
          Length = 64

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 339 FYPRETHGIPNGSSRPAHGHGSFYNYRNPALVDVKNAPAY 458
           + P   HG P G+  P +G    Y Y +PA V     P Y
Sbjct: 6   YTPYVAHGSPYGA--PMYGSPYGYGYASPAYVQPVGPPVY 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,826,604
Number of Sequences: 27780
Number of extensions: 246424
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)