Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n13
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 630 FRLIVQKYVLLYWGYYIAEEAK 565
           FR I +KY  ++ GY++  E+K
Sbjct: 112 FRNISEKYQEIFNGYFLNSESK 133


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 237 CGALLIVVPSMCRPYDPEDKSLKDVL-PSSGQFEAFYPRETHGIPNGSSRPAHG 395
           C  L +  PS+       +     VL PS    +  +PRE   +  GS+   HG
Sbjct: 393 CNGLELRDPSLFVETSASELVESSVLFPSLDSRDELHPRELEAVNLGSACRIHG 446


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 75   KTKRGTVTRAVP*HNTF 25
            + KRGTV R++  H+T+
Sbjct: 1666 RIKRGTVIRSIRSHSTW 1682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,622
Number of Sequences: 438
Number of extensions: 2733
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)