Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n05
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8A072 Cluster: Exo-poly-alpha-D-galacturonosidase; n=1...    35   1.6  
UniRef50_Q9FAK8 Cluster: DNA-directed RNA polymerase subunit D; ...    35   1.6  
UniRef50_A7NG70 Cluster: Putative uncharacterized protein precur...    35   2.1  
UniRef50_Q554N7 Cluster: EGF-like domain-containing protein; n=2...    34   3.7  
UniRef50_P90975 Cluster: Cyclic nucleotide-gated channel; n=3; C...    33   8.5  

>UniRef50_Q8A072 Cluster: Exo-poly-alpha-D-galacturonosidase; n=1;
           Bacteroides thetaiotaomicron|Rep:
           Exo-poly-alpha-D-galacturonosidase - Bacteroides
           thetaiotaomicron
          Length = 352

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 306 CTPRRATGNHFELWAQLMQAGALSWLPKMLHREEPG 199
           CTP +  GN FE W Q+ Q   LSW   +  R+ PG
Sbjct: 19  CTPAKQAGNSFE-WGQVPQQPDLSWADSVGSRQLPG 53


>UniRef50_Q9FAK8 Cluster: DNA-directed RNA polymerase subunit D;
           n=165; Proteobacteria|Rep: DNA-directed RNA polymerase
           subunit D - Pseudomonas syringae pv. savastanoi
          Length = 271

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 ILDGYLDPGESISAPS-VFPYMKTKAEKQSEADDDEE 548
           +L GY+DP + I+ P+ V P +  KA K    DDDEE
Sbjct: 54  VLSGYIDPDDGIAPPAEVPPPVDPKAVKAEGTDDDEE 90


>UniRef50_A7NG70 Cluster: Putative uncharacterized protein
           precursor; n=1; Roseiflexus castenholzii DSM 13941|Rep:
           Putative uncharacterized protein precursor - Roseiflexus
           castenholzii DSM 13941
          Length = 221

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
 Frame = +2

Query: 179 VESAAGLPGSSRWSIFGSQDKAPACISWAH----NSK*FPVARRGVHQ--EKL*VATEGV 340
           V SA      SR SI  +Q++   C+ +A      S   PVA RG +   E + VAT+G 
Sbjct: 34  VISALVNTSESRLSISNAQEQGEHCVVYAEATAPGSSAAPVAWRGCYPTFEAIAVATDGR 93

Query: 341 VFGPV*TSPYNLSDD 385
           V  P   SP +LSDD
Sbjct: 94  VHLPPSASPDDLSDD 108


>UniRef50_Q554N7 Cluster: EGF-like domain-containing protein; n=2;
            Dictyostelium discoideum|Rep: EGF-like domain-containing
            protein - Dictyostelium discoideum AX4
          Length = 1918

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 111  GDSFQFCK-MTSCCTCEGHHSGAKSSLPLV 197
            G SF  C   T  CTC+G   GA  SLPL+
Sbjct: 1256 GSSFGSCNNQTGVCTCDGSQQGADCSLPLI 1285


>UniRef50_P90975 Cluster: Cyclic nucleotide-gated channel; n=3;
           Caenorhabditis|Rep: Cyclic nucleotide-gated channel -
           Caenorhabditis elegans
          Length = 800

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 27/101 (26%), Positives = 43/101 (42%)
 Frame = +3

Query: 264 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI 443
           P +++ F LLD     K      R L   P R P +   + + +     L  +   ++  
Sbjct: 43  PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100

Query: 444 LDGYLDPGESISAPSVFPYMKTKAEKQSEADDDEEIIYILQ 566
           LDG LDP  S  A S+     T+A    E D   +I +I++
Sbjct: 101 LDGRLDPASSFDANSL---SATRASSIIEDDVRSQISFIMR 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,994,679
Number of Sequences: 1657284
Number of extensions: 14172217
Number of successful extensions: 40242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40224
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)