Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n04
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.65 
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    27   3.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   8.0  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   8.0  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   8.0  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 347 QQIILVYNILPFTLVFIFADNFACVFELKT 436
           ++ I  Y++   T VF+ AD  AC+F L +
Sbjct: 232 EKFIASYSLAEITSVFVLADGTACIFTLSS 261


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 468 PSLIMFTEHLHVFSSNTQAKLSANINTRVNGS 373
           P ++ F E      +NT+  L  NIN  + GS
Sbjct: 598 PEILFFDEATSALDTNTERALLRNINDLIKGS 629


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 511 VQTVSLPQ--DCTAVVTESHNVY*TSSRLQFEHTSEIVRKYKYE 386
           + ++ LP   DC+A V +   +   S R+  E   EI  K+KYE
Sbjct: 112 IHSLILPSAHDCSANVVDRPEIS-MSPRISIEEKLEIFSKWKYE 154


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 562 GNNWQTAFQAASINESCLFN 621
           G NW+  F++ S+ E CL N
Sbjct: 70  GKNWRHVFKSLSLLEYCLHN 89


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 545 NLSPLLNSAWTSTDCFLATG 486
           N  P+L+  W+ TD +LA G
Sbjct: 304 NKGPVLSLKWSGTDTYLAAG 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,992
Number of Sequences: 5004
Number of extensions: 57198
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)