Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n04
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743...    28   8.3  

>03_02_0762 -
           10968888-10969466,10972522-10974175,10974277-10974359,
           10974435-10974533,10974620-10974706,10974782-10974838,
           10974939-10975065,10975344-10975465,10975685-10975732,
           10975867-10976268
          Length = 1085

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 475 QQCSPVARKQSVLVQAEFNNGDRFTPCRAGNNWQTAFQAASINESCLFNEQCEDVD 642
           +QCS    ++      E N+ +    C +   WQ        + S L  E C+D+D
Sbjct: 580 EQCSADYNQRHRRSWREINDDEDIVGCYSARRWQQRHDDLHGSHSMLKAEVCDDID 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,025,523
Number of Sequences: 37544
Number of extensions: 327891
Number of successful extensions: 746
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)