Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n04
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    35   0.065
Z78412-4|CAB01654.2|  211|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    29   3.2  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    29   4.3  
AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    27   9.9  

>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 601 NESCLFNEQCEDVDFKTECKNERCACKFE 687
           N  C F+EQCE V   T C+N +C C  E
Sbjct: 86  NVGCTFDEQCEGVWPMTRCQNGQCECSEE 114


>Z78412-4|CAB01654.2|  211|Caenorhabditis elegans Hypothetical
           protein M176.5 protein.
          Length = 211

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +1

Query: 418 CVRTEDVKMFSKHYETRLLQQCSPVARKQSVL----VQAEFNNGDRFTPCR-AGNNWQTA 582
           C+   D   F+K++ +  L   SPV+RK+        +A  N+  R T CR A   W   
Sbjct: 111 CISIHDKFKFAKNFSSEELTSTSPVSRKKRSARRNKREARRNSNSRATECRTAAKLWHK- 169

Query: 583 FQAASINESCLFNEQCE 633
            Q +++ + C   E C+
Sbjct: 170 -QCSALAKCCPLVEDCK 185


>U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical
           protein M03F4.6 protein.
          Length = 413

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 598 INESCLFNEQCEDVDFKTECKNERCAC 678
           I   CLF+E+C  ++  + C+N RC C
Sbjct: 31  IGSDCLFDEECYGMN--SVCRNSRCTC 55


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/93 (19%), Positives = 37/93 (39%)
 Frame = +1

Query: 418 CVRTEDVKMFSKHYETRLLQQCSPVARKQSVLVQAEFNNGDRFTPCRAGNNWQTAFQAAS 597
           CV+T+ ++      + + +QQC+P       +++       +  P    +  Q   Q   
Sbjct: 163 CVQTQPIQQCQPQCQQQCVQQCAPTTTAAPQIIKINMEISAQCVPQCQQSCQQQCVQQQV 222

Query: 598 INESCLFNEQCEDVDFKTECKNERCACKFEMVP 696
             + C  N+QC     +T C+     C+ +  P
Sbjct: 223 PAQQC--NQQCTQ-QCQTTCQQAVPQCQQQCAP 252


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/93 (19%), Positives = 37/93 (39%)
 Frame = +1

Query: 418 CVRTEDVKMFSKHYETRLLQQCSPVARKQSVLVQAEFNNGDRFTPCRAGNNWQTAFQAAS 597
           CV+T+ ++      + + +QQC+P       +++       +  P    +  Q   Q   
Sbjct: 163 CVQTQPIQQCQPQCQQQCVQQCAPTTTAAPQIIKINMEISAQCVPQCQQSCQQQCVQQQV 222

Query: 598 INESCLFNEQCEDVDFKTECKNERCACKFEMVP 696
             + C  N+QC     +T C+     C+ +  P
Sbjct: 223 PAQQC--NQQCTQ-QCQTTCQQAVPQCQQQCAP 252


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 204 SIANVVKWILALVEYAPLLDVHLKREHKCTQCVN 305
           SIA  + +IL LV + P+L V  + EHK T   N
Sbjct: 467 SIALALTYILQLVLFGPILAVATRYEHKTTTTSN 500


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 442 SSRLQFEHTSE-IVRKYKYEGKWKY 371
           + RL F HT E IV+ + Y+GK+K+
Sbjct: 386 NERLDFNHTIEKIVQNHNYDGKYKF 410


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/93 (20%), Positives = 41/93 (44%)
 Frame = +1

Query: 418 CVRTEDVKMFSKHYETRLLQQCSPVARKQSVLVQAEFNNGDRFTPCRAGNNWQTAFQAAS 597
           CV+T+ V+        + +Q+C+P+   Q  L+        + + C+     Q   Q  S
Sbjct: 139 CVQTQPVQHCQSQCHQQCVQRCAPIVAPQ--LININLEAPAQCSQCQQSCQQQCVQQQYS 196

Query: 598 INESCLFNEQCEDVDFKTECKNERCACKFEMVP 696
           + + C  N+ C +++ +  C+     C+ +  P
Sbjct: 197 V-QQC--NQHC-NLECQPTCQQAVSQCQQQCAP 225


>AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical
           protein Y71D11A.5 protein.
          Length = 508

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 564 SSSAGCEPVTIVKLSLDQYRLFPCHRTALL 475
           SSS  CEP  +V L LD+    P   ++ L
Sbjct: 439 SSSCSCEPTNVVNLMLDEAETIPTSTSSSL 468


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
           protein C06B3.2 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 356 ILVYNILPFT-LVFIFADNFACVFEL 430
           + VY ILP T L +IFA  ++C+FE+
Sbjct: 636 VYVYYILPATILTYIFAFFWSCLFEI 661


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 601 NESCLFNEQCEDVDFKTECKNERCACKFE 687
           +  C ++ QC  V   + CKN +C C  E
Sbjct: 156 DSGCFYDTQCASVWPDSYCKNGQCMCPSE 184


>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 276 REHKCTQCVNIKDNV*LRN*VPLYNK*F*SIIYFHLPSYLYLR 404
           +EH  T   NIK ++ L   +   N  F +I++F L  Y Y+R
Sbjct: 191 KEHNGTITFNIKPSIGLALNIMTMNISFFAILFFGLKCYYYMR 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,600,875
Number of Sequences: 27780
Number of extensions: 328012
Number of successful extensions: 952
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)