Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n04
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   6.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 470 YYSSAVLWQGNSLYWSRLSL 529
           YYS  V+WQ  ++Y S  S+
Sbjct: 136 YYSGLVVWQPPAVYKSSCSI 155



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 345 KAVPSFSIKHCLLY*HTACTCVHV*GAH 262
           ++ P+FS   C    H +C CV     H
Sbjct: 470 RSPPAFSHSRCPPEIHKSCICVRFIAEH 497


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 345 KAVPSFSIKHCLLY*HTACTCVHV*GAH 262
           ++ P+FS   C    H +C CV     H
Sbjct: 470 RSPPAFSHSRCPPEIHKSCICVRFIAEH 497


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 533 LLNSAWTSTDCFLATGL 483
           +LN+ WT +D  L+ GL
Sbjct: 447 ILNTFWTKSDVDLSRGL 463


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 496 RKQSVLVQAEFNNGDRFTPCRAGNNWQTAFQAASINE 606
           +K  +L+Q   NN    TPC   N  + +F    IN+
Sbjct: 60  QKLRLLLQGNINNQLFQTPCELLNFPKRSFSENMIND 96


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 370 YTSIYPRIYICGQFRLCVRTEDVKMFSKHYETR 468
           Y+S Y R Y   +++L    EDV++ + +Y  R
Sbjct: 206 YSSKYMREYNDPEYKLDYFMEDVELNAYYYYMR 238


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 542 LSPLLNSAWTSTDCFLAT 489
           L P+L  +W S D  L T
Sbjct: 106 LGPMLCDSWVSLDILLCT 123


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 460 HNVY*TSSRLQFEHTSEIVRKYKYEGKWKYIID 362
           H++   S+  +    + IV+ + Y   W YI D
Sbjct: 172 HDIAINSTTGKRNVVTPIVQSFDYNNTWVYIAD 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,786
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)