Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n01
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    87   2e-18
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    50   3e-07
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    33   0.037
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    30   0.26 
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    28   1.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.8  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   1.8  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    26   5.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.6  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.8  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   9.8  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   9.8  

>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 2/166 (1%)
 Frame = +2

Query: 173 EPIENLKNKTTLVT-GKKINVKLKTSELKRLLGLAEPEKWTLTGAIGFLIVSSSVTMAVP 349
           + I  +    TL T  KK+NV        RL  LA  + W    A   L+VSS VTM++P
Sbjct: 124 QDISKINTNGTLQTPNKKVNVF-------RLFTLARGQGWNFFIAGSLLLVSSGVTMSIP 176

Query: 350 FSLGKVLDIIYNSTSDLAAARE-KLDALCLMLCGVFLIGGLCNFGRVYLMSISGQRMTQA 526
           + +GK+LD   +  S +            + L G+F +G  CNFGR+  + +  +R+   
Sbjct: 177 YIVGKILDAGSSGDSSVTHIMGIPSGTFYIGLLGLFFLGSACNFGRIITLRLLSERIVSR 236

Query: 527 LRKQVYGAILKQETAWFGRTSTGELVNRLSADTQLVGRNLSQNVSD 664
           LR +++   +  + A+F     G+L++RL+ D+ +VG++LS  +SD
Sbjct: 237 LRARLFAKCMSLDGAFFDFHKHGDLISRLTTDSSIVGKSLSMYLSD 282


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 9/172 (5%)
 Frame = +2

Query: 170 EEPIENLKNKTTLVTGKKIN-VKLKTSELKRLLGLAEPEKWTLTGAIGFLIVSSSVTMAV 346
           ++P E    +   +  K+IN    K S   R+L  A+  KW +   +   I      + +
Sbjct: 52  KDPFEQYTPEEQEILYKQINDTPAKLSGYPRILSYAD--KWDIMLQLAGTITGIGAGLGM 109

Query: 347 PFSLGKVLDIIYNSTSDLAAAR------EKLDALCLMLCGVFLIGGLCNFGRVYLMS--I 502
           P  +  V   +  + +DLA+ +        +D  CL    +++  G+     +Y ++  I
Sbjct: 110 PL-MSLVSGQLAQAFTDLASGKGASSFQHTVDHFCLYF--IYIAIGVFGCSYIYTVTFII 166

Query: 503 SGQRMTQALRKQVYGAILKQETAWFGRTSTGELVNRLSADTQLVGRNLSQNV 658
           +G+R+ + +R+    AIL Q   +F R   GE+  R++ DT  +   L + V
Sbjct: 167 AGERIARRIRQDYLHAILSQNIGYFDRLGAGEITTRITTDTNFIQDGLGEKV 218


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 503  SGQRMTQALRKQVYGAILKQETAWFGRTSTGELVNRLSADTQLVGRNLS 649
            + +++  ++ + V+G       +WF +T TG +VNR + D + +  NLS
Sbjct: 965  ASRKLHDSMLESVFGTF----ASWFDKTPTGRIVNRFAKDIRSIDMNLS 1009


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 3/172 (1%)
 Frame = +2

Query: 128 QIGY--YTSQIDAQKNEEPIENLKNKTTLVTGKKINVKLKTSELKRLLGLAEPEKWTLTG 301
           + GY  Y ++ DA  +  P E   N T +     I+   K      + G+     W LT 
Sbjct: 196 KFGYRNYLTESDAW-SLPPAERSSNLTIVFEKNWISHAKKKKSSLYMWGVLFLNHWKLTV 254

Query: 302 AIGFL-IVSSSVTMAVPFSLGKVLDIIYNSTSDLAAAREKLDALCLMLCGVFLIGGLCNF 478
            I  L +V   V    P  + K++  + + +S+     +   +L + +    ++      
Sbjct: 255 VIIVLKLVQDVVAFIQPNLIRKIVIFVSSYSSEHPQPPQVGFSLAIAMFLTNVVQTALLQ 314

Query: 479 GRVYLMSISGQRMTQALRKQVYGAILKQETAWFGRTSTGELVNRLSADTQLV 634
               L  + G R    L   +Y   L+  +A     S G++VN +S DTQ V
Sbjct: 315 QYFQLGMVLGMRWRSELITAIYRKSLRLSSAARQSRSVGDIVNYMSVDTQKV 366


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -1

Query: 371 QVLCQGKMVRPSSHLMTLLGN---QWHQLMSIFQV 276
           +VLCQ   V+P  + +T+ G+   Q+H LM +F++
Sbjct: 50  EVLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKI 84


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 467  LCNFGRVYLMSISGQRMTQALRKQVYGAILKQETAWFGRTSTGELVNRLSAD 622
            L +  R    +  G+  ++ +   +   +L     WF +T+ G ++NR S D
Sbjct: 915  LMDLSRAITFAKGGRTASENIHDILSERVLYSPLHWFEKTAAGRILNRFSKD 966


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 315 RKPMAPVNVHFSGSASPSNR-FSSEVFNFTLIFLPVTNVVLFFKFSMGSS 169
           R P+ PV  H  G  SPS R + + + +  L+ L ++ V+ F+ FS   S
Sbjct: 5   RDPLLPV--HGEGPESPSRRNWKTWIKHGILLILVLSTVIFFYFFSSHKS 52


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 375 ISSTLPRENGTAIVTLDDTIRKPMAPVNVHFSGSASPSNRFSSE 244
           ISS +      A+V    TIR+P  P+++H        NR +S+
Sbjct: 158 ISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASD 201


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
 Frame = +2

Query: 35   ELSHYFYFEMSLSKLIVKNQVKNTTTAVNHCQIGYYTSQIDAQKNE--EP-IENLKNKTT 205
            EL   F   + L  +  +  ++     +   + G   S +D  K E  EP IE  K+   
Sbjct: 925  ELRKKFAVNVPLGLVFSEPTIEGLAKEIERMKSGEMISVMDIGKEETREPEIEYGKDALD 984

Query: 206  LVTGKKINVKLKTSELKRLLGLAEPEKWTLTGAIGFLIVSSSVTMAVPFSLGKVLDIIYN 385
            LV    I  +  TS   + LG+ EP+   LTGA G+L V     +    S  KV+ ++  
Sbjct: 985  LVD--LIPKEFPTS---KDLGIDEPKTVFLTGANGYLGVFILRDLMTRSSNLKVIALVRA 1039

Query: 386  STSDLAAAREK 418
            S+ +    R K
Sbjct: 1040 SSEEHGLKRLK 1050


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 170 EEPIENLKNKTTLVTGKKINVKLKTSE 250
           E P +  K   T+ TGK I+V+++ SE
Sbjct: 352 ENPFKRFKIMLTVYTGKVISVEVQLSE 378


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 296 LMSIFQVRPVQVIVLVLKFLILH*FSCP*LMWFYFSNFQWVL 171
           + S  Q R V ++  +LK   ++ F+ P LM+F     QW L
Sbjct: 139 IRSFPQKRGVNMLYAILKLTFVNAFAIPLLMFFRSHFEQWRL 180


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 146 SQIDAQKNEEPIENLKNKTTLVTGKKINVKLKTSELKR 259
           S I+A K+ + I +L+ K +    KK+N    TSE  R
Sbjct: 107 SDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,467
Number of Sequences: 5004
Number of extensions: 56183
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)