Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2n01
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
 Frame = +2

Query: 326 SSVTMAVPFSLGKVLDIIYNSTSDLAAAR---------EKLDALCLMLCG-VFLIGGLCN 475
           S  TMA+P+++ K     + +TS L  A               LC+ + G VF++ GL  
Sbjct: 134 SDSTMAIPYAVTKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSGLLM 193

Query: 476 F-GRVYLMSISGQRMTQALR 532
             G V  +S+    +   LR
Sbjct: 194 LVGMVMYISVFKAEVGSKLR 213


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 TGRT*KMDINWCHWFPNSVIKC 333
           +G T K+ I WC W    + KC
Sbjct: 379 SGATDKI-IRWCTWSEGDLEKC 399


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 TGRT*KMDINWCHWFPNSVIKC 333
           +G T K+ I WC W    + KC
Sbjct: 379 SGATDKI-IRWCTWSEGDLEKC 399


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 TGRT*KMDINWCHWFPNSVIKC 333
           +G T K+ I WC W    + KC
Sbjct: 379 SGATDKI-IRWCTWSEGDLEKC 399


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 254 KRLLGLAEPEKWTLTGAI 307
           KRL GL     W L GAI
Sbjct: 153 KRLAGLMIVAVWVLAGAI 170


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 104  TTTAVNHCQIGYYTSQIDAQKNEEP--IENLKNKTTLVTGKKINVKLKTSELKR 259
            TTT     Q  YY  ++  QKN +P  + +   +T+    K  N  +  S+  R
Sbjct: 960  TTTIDCSTQSEYYELEVKDQKNGKPPSVVSRSTQTSANNDKDTNAVVTQSKEAR 1013


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,103
Number of Sequences: 438
Number of extensions: 3686
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)