Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m23
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical
           protein F58G1.6 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 508 LIFNDGNIWISFEVIKFLTNTGCFSQHAAYLLGTY 404
           L++N   + +++E++  LTN+GCF       LG Y
Sbjct: 282 LVWNGNPVQVTYELL--LTNSGCFEIGTPVFLGNY 314


>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 517 VVILIFNDGNIWISFEVIKFLTNTGCFSQHAA 422
           V ++ F++GN WI++  I F TN    + +AA
Sbjct: 23  VSMINFSNGNTWITYAAITFYTNNYYSNSNAA 54


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 424 AYLLGTYIISCCSFQDFYFSLKTILFTNVIKIVNFDHLVSFISFPNLF 281
           A ++GT  I+C S   FYF     +    + IV    ++ F+ FP  F
Sbjct: 46  AMIIGTKPITCDSVYQFYFRRSKRILPLYLFIVFVGVILVFVLFPKTF 93


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
 Frame = -2

Query: 463 KFLTNTGCFSQHAAYLLGTYIISCCSFQDFYFSLK-----TILFTNVIKIVN--FDHLVS 305
           +F+ +   F +  AYLL  + ISC  F    + +K      I +  ++ + +  F+ +VS
Sbjct: 88  RFMISGEFFVEKCAYLLIFFFISCTMFLYAVYLVKHETELKIRYRAILTLPSMFFEMIVS 147

Query: 304 FISF----PNLFN*SSLIQHRVPDIF 239
           F+S+     ++FN SS  Q + PD F
Sbjct: 148 FLSYYSTIISIFNYSSTAQ-KNPDFF 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,701,399
Number of Sequences: 27780
Number of extensions: 294615
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)