Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m15
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.1  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -2

Query: 253 LR*SLLPQSKPRCYRTGFRSGTTPLACKATVAANISSTVFYVSPLCYFSSNVC 95
           +R  +L  ++P C     +    P+   + +  N++     V+P C   S+VC
Sbjct: 101 IRPPILHDTQPMCESLNTQP---PVTSSSNILQNLADITPNVTPNCDVKSSVC 150


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -2

Query: 253 LR*SLLPQSKPRCYRTGFRSGTTPLACKATVAANISSTVFYVSPLCYFSSNVC 95
           +R  +L  ++P C     +    P+   + +  N++     V+P C   S+VC
Sbjct: 101 IRPPILHDTQPMCESLNTQP---PVTSSSNILQNLADITPNVTPNCDVKSSVC 150


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -2

Query: 253 LR*SLLPQSKPRCYRTGFRSGTTPLACKATVAANISSTVFYVSPLCYFSSNVC 95
           +R  +L  ++P C     +    P+   + +  N++     V+P C   S+VC
Sbjct: 101 IRPPILHDTQPMCESLNTQP---PVTSSSNILQNLADITPNVTPNCDVKSSVC 150


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 473 PICTLIPLDKSRDGILNFS 417
           PIC  IP DK+ + +  ++
Sbjct: 326 PICVQIPWDKNAEALAKWA 344


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 512 LDPEGLRIITRTIP 471
           L P   R++TRTIP
Sbjct: 14  LTPTDQRVVTRTIP 27


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 467 CTLIPLDKSRDGILNFSCTSI 405
           C  +PL K R  +    C SI
Sbjct: 65  CECVPLQKKRRIVARVQCRSI 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,757
Number of Sequences: 336
Number of extensions: 3272
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)