Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m14
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   1.9  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   3.3  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.3  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    26   4.4  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   5.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   5.8  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   7.7  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   7.7  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.7  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 51   CKFPCA-FPCDTNKCTYSGYF*KRSTMDYIVGSVAALVSGNVTPNRPR-LLKRPLTPTKH 224
            C  P + F    +  T S  F  + ++D I  +   L+ G++    P  LLK+PL  T +
Sbjct: 909  CTIPNSIFDSPNSHTTNSNSFFTKVSLD-IYNNDPLLMDGSLKRREPAFLLKKPLLSTLN 967

Query: 225  QPSPNVTPKSEFVEDRSIFLSPTLQKKKAMV 317
                ++ P+S  + + ++ ++ T  ++  ++
Sbjct: 968  YQLKDINPRSSALGEYALHVTYTTVEEHLLI 998


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +3

Query: 279 FLSPTLQKKKAMVKKSPKRIFENPDLELTENSDTTTPSPKAEKVKKHLKN 428
           F S T +  K  +  S  R F +  LE      T T S +AEK+KKHL +
Sbjct: 360 FDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDEAEKLKKHLSS 409


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 162 SGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSP 329
           S NV+ + P +   P T   H   P   P    + +  ++ SP+ Q++     KSP
Sbjct: 317 SPNVS-SHPHMAFLPATVPTHSAPPGFVPYDFPITNDKMYPSPSFQEEFPSTSKSP 371


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 307 FFFCNVGDRNIERSSTNSLLGVTFGEGWCLVGVRGRLSNLGRFGVTLP 164
           F FCN  +R    S       V  G+G   +G RG++S+  R G+  P
Sbjct: 21  FAFCNCNNRFKMMSGGGKGKHVG-GKGGSKIGERGQMSHSARAGLQFP 67


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 161 NQSSNASYNVIHCAPFLKISTIRTFIGITWK 69
           N S +AS  ++ C P+  +  +    G  WK
Sbjct: 284 NPSIDASEFILSCLPYTSLDALNVVCGQVWK 314


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +3

Query: 192 LLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPDLELTEN 371
           +++ P+ P +      V+ ++   E         +   K+ +  SP+ I +N D+E  E 
Sbjct: 103 IVEEPIVPEEPDNLEGVSEETPLKETSLELSEEEIITSKSPIP-SPETIHKNIDVEEKET 161

Query: 372 SDTTTPSPKAE 404
            + TTP  + E
Sbjct: 162 IEPTTPVKEVE 172


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 300 KKKAMVKKSPKRIFENPDLELTE--NSDTTTPSPKA 401
           K +  VKK+ K + + P +ELT+  +SD  TP  K+
Sbjct: 4   KSEKAVKKAQK-LSKEPSVELTDTKSSDNVTPKQKS 38


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 7   QTTECHETSNQ*KNIVNSHVRFHVIPIN 90
           +++  + T+++ K+ + SH   H IPIN
Sbjct: 621 RSSSYNSTASESKSEITSHQNLHTIPIN 648


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 129 DYIVGSVAALVSGNVTPNRPRLLKRPL 209
           DY    VAA   G+V  N P L K PL
Sbjct: 144 DYFCIGVAAYPEGHVDSNVPELSKDPL 170


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 216 TKHQPSPNVTPK-SEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPDLELTENSDTTTPS 392
           TK     +  PK S     +S+  + T    K   KKS K+  ++   + + N  ++T  
Sbjct: 165 TKFPLGKSYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKKNSKSESNQDSSNDRSSTAP 224

Query: 393 PKAEKVKKHLKN 428
             AE   +HL +
Sbjct: 225 STAESNNEHLSS 236


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 333 RIFENPDLELTENSDTTTPSPKAEKVKKHLKNEL 434
           R  E+ +++L  ++DT T   + E VKK   +++
Sbjct: 84  RSLESQNMQLPPDNDTATRKTQTEAVKKKFMDQI 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,977
Number of Sequences: 5004
Number of extensions: 48547
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)