Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2m14
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 30 1.1
03_02_0847 + 11721847-11722294,11723043-11723108,11723276-117233... 30 1.1
01_05_0014 - 17162664-17163500 29 1.9
08_02_0118 + 12772636-12772910,12773151-12773254,12774097-127744... 29 2.6
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 29 2.6
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602... 29 3.4
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 5.9
02_03_0246 - 16807619-16808145,16808208-16808868 28 5.9
04_03_0135 + 11686724-11687209 27 7.8
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 27 7.8
01_01_0590 + 4396958-4397155,4397246-4397335,4397445-4397583,439... 27 7.8
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +3
Query: 228 PSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPDLELTENSDTTTPSPKAEK 407
P + + K++ + + + T+ KK+ + + + + N L T + D+T +P+A
Sbjct: 766 PVSSASRKTKDLSENRARMESTITKKRVVDRLPFQTLLSNSPLRHTSSLDSTQVNPRAVD 825
Query: 408 VKKHLKNELD 437
V L+ EL+
Sbjct: 826 VAMKLEGELN 835
>03_02_0847 +
11721847-11722294,11723043-11723108,11723276-11723358,
11723585-11723673,11723783-11723906
Length = 269
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 274 ERSSTNSLLGVTFGEGWCLVGVRGRLSNLGRFGVTLPETKAATLPTM 134
++ +L GV GE CL G+ G G +GV + +A LPT+
Sbjct: 76 DKGCCGALAGVVDGEAACLCGLVG---GYGAYGVRVDAVRALALPTI 119
>01_05_0014 - 17162664-17163500
Length = 278
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 204 PLTPTKH-QPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPD 353
P+ +H P P V S+F ED P++QK A VKK K E D
Sbjct: 185 PMKVKRHLTPPPIVRTPSQFQEDEVKSPEPSVQKLAAQVKKLRKENIELRD 235
>08_02_0118 +
12772636-12772910,12773151-12773254,12774097-12774487,
12774795-12774870,12775030-12775047
Length = 287
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 204 PLTPTKH-QPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPD 353
P+ +H P P V S++ ED L P++ K A VKK K E D
Sbjct: 184 PMKVKRHLMPPPIVRAPSQYQEDEVKSLEPSIHKLAAHVKKLRKENIELRD 234
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +3
Query: 225 QPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPDLELTENSDTTTPSPKAE 404
QPS +V+P + + +++ L+ T +A+ + +P + + ++ N TTT P
Sbjct: 488 QPSSSVSPCNRALGEQTPRLNSTSHLGEAVKQLAPNNLGVHSSMDRPANGSTTTSVPLKR 547
Query: 405 KVKKHLKNELD 437
+ H L+
Sbjct: 548 NLVSHPARTLE 558
>01_01_0778 +
6024154-6024315,6024725-6024802,6024909-6025071,
6025484-6025788,6025897-6025961,6026570-6026763,
6027233-6027441,6028147-6028325,6029345-6029459,
6029520-6029558
Length = 502
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 144 SVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKS 254
S +A + P+RPRL R QP P V P S
Sbjct: 9 SSSAAAAARAAPHRPRLRSRRSLRPPPQPQPRVLPSS 45
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +3
Query: 117 RSTMDYIVGSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVED 269
R + ++ GS ++ SG RP P T P P ++ F+++
Sbjct: 233 RKKLKHLGGSGSSGASGQAPKQRPSPASAPSTAPPQPPPPKISKSPSFIQE 283
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 137 CRKRCCFGFRQRNTEPS*ITQTTPNA 214
CR CC G R+R PS TTP A
Sbjct: 114 CRPPCCCGRRRRAASPSASPCTTPPA 139
>04_03_0135 + 11686724-11687209
Length = 161
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 204 PLTPTKH-QPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPD 353
P+ +H +P P V S+F E+ P++ K A VKK K E D
Sbjct: 68 PMKVKRHLKPPPIVRAPSQFQEEEVKSPEPSIHKLAAQVKKLRKENIELKD 118
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.5 bits (58), Expect = 7.8
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 162 SGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIF 341
SG + P R LLK P P +P ED++I S +Q ++K SPK
Sbjct: 513 SGGIAPERSSLLKAPCLPKVEVSAP---------EDKTIPASGPMQ----VMKASPKEPL 559
Query: 342 ENPDLELTENSDTT 383
+ + E ++TT
Sbjct: 560 RIGPVSMPEQTNTT 573
>01_01_0590 +
4396958-4397155,4397246-4397335,4397445-4397583,
4398125-4398243,4398492-4398559,4399409-4399457,
4399713-4400732
Length = 560
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/96 (23%), Positives = 42/96 (43%)
Frame = +3
Query: 138 VGSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQKKKAMV 317
+G A LV G+ PN + P+ +K + V ++ +I L+P + A V
Sbjct: 411 MGLSAILVPGSGEPNFDTFVDNPVETSKQRREKEVQSLLNKLQPETIMLNPNM---IATV 467
Query: 318 KKSPKRIFENPDLELTENSDTTTPSPKAEKVKKHLK 425
+ S K+ + E+ E + + K+ + KK K
Sbjct: 468 RPSRKK-EKKTKKEIEEEMEDAVEAAKSIEFKKKTK 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,984
Number of Sequences: 37544
Number of extensions: 292209
Number of successful extensions: 797
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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