Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m11
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical ...   233   1e-61
Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical pr...   112   3e-25
Z81044-2|CAB02813.1|  337|Caenorhabditis elegans Hypothetical pr...   101   4e-22
Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical pr...    74   1e-13
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    29   4.5  
AL110479-2|CAB54350.2|  438|Caenorhabditis elegans Hypothetical ...    28   6.0  
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like nucl...    28   7.9  
AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical
           protein W02F12.5 protein.
          Length = 463

 Score =  233 bits (569), Expect = 1e-61
 Identities = 108/151 (71%), Positives = 128/151 (84%)
 Frame = +3

Query: 3   VIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIE 182
           V++ENEI+YR +VDISVAVATPKGLVVPV+RNV++M YA IEL +A L  KAR GKL +E
Sbjct: 313 VLDENEIVYRHFVDISVAVATPKGLVVPVLRNVESMNYAQIELELANLGVKARDGKLAVE 372

Query: 183 EMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTY 362
           +M+GGTFTISNGGVFGS+ GTPIINPPQSAILGMHG+F+R + +NG+  IRP+M IALTY
Sbjct: 373 DMEGGTFTISNGGVFGSMFGTPIINPPQSAILGMHGVFDRVVPVNGKPEIRPIMQIALTY 432

Query: 363 DHRLIDGREAVLFLRKIKEGVEDPATIVAGL 455
           DHRLIDGREAV FL+KIK  VEDP  +   L
Sbjct: 433 DHRLIDGREAVTFLKKIKTAVEDPRIMFMNL 463


>Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical
           protein F23B12.5 protein.
          Length = 507

 Score =  112 bits (269), Expect = 3e-25
 Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 3/140 (2%)
 Frame = +3

Query: 36  YVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISN 215
           +VD+SVAV+TP GL+ P+I N      A I   I  LA++AR GKL   E  GGTFT+SN
Sbjct: 368 HVDVSVAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPHEFQGGTFTVSN 427

Query: 216 GGVFGSLMG-TPIINPPQSAILGMHGIFER--PIALNGQVVIRPMMYIALTYDHRLIDGR 386
            G+FGS+   T IINPPQS IL + G  ++  P    G   I+ M  + L+ DHR +DG 
Sbjct: 428 LGMFGSVSDFTAIINPPQSCILAIGGASDKLVPDEAEGYKKIKTMK-VTLSCDHRTVDGA 486

Query: 387 EAVLFLRKIKEGVEDPATIV 446
              ++LR  KE +E P T++
Sbjct: 487 VGAVWLRHFKEFLEKPHTML 506


>Z81044-2|CAB02813.1|  337|Caenorhabditis elegans Hypothetical
           protein C30H6.7 protein.
          Length = 337

 Score =  101 bits (243), Expect = 4e-22
 Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
 Frame = +3

Query: 39  VDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNG 218
           VDISVAVATP GL+ P++ N   +    I   +  L+  AR  KL  ++  GG+FTISN 
Sbjct: 185 VDISVAVATPTGLITPIVENSDILGVLAISSKVKELSGLARESKLKPQQFQGGSFTISNL 244

Query: 219 GVFGSLMG-TPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAV 395
           G+FGS+   T IINPPQ AIL + G     ++++GQ+  + +M + L +D R I    A 
Sbjct: 245 GMFGSVTNFTAIINPPQCAILTIGGTRSEVVSVDGQLETQKLMGVNLCFDGRAISEECAK 304

Query: 396 LFLRKIKEGVEDPATIVA 449
            FL    E + DP  ++A
Sbjct: 305 RFLLHFSESLSDPELLIA 322


>Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK669.4 protein.
          Length = 448

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
 Frame = +3

Query: 21  IIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGT 200
           +I++   +I +A+ TP GLVVP I+N +  +  +I   +  L E  +  ++  E++  GT
Sbjct: 302 VIHKASHNICLAMDTPGGLVVPNIKNCEQRSIFEIAQELNRLLEAGKKQQIKREDLIDGT 361

Query: 201 FTISNGGVFGSLMGTPIINPPQSAILGMHGIFERP-IALNGQVVIRPMMYIALTYDHRLI 377
           F++SN G  G    +P++ PPQ AI  +  I + P    +  V+   +M ++   DHR++
Sbjct: 362 FSLSNIGNIGGTYASPVVFPPQVAIGAIGKIEKLPRFDKHDNVIPVNIMKVSWCADHRVV 421

Query: 378 DGREAVLFLRKIKEGVEDPATIVAGL 455
           DG     F  + K  +E P+ ++A L
Sbjct: 422 DGATMARFSNRWKFYLEHPSAMLAQL 447


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
 Frame = +2

Query: 11   RKRDNL*GLRRYFGSGRHTERSR---RAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDR 181
            ++ D   G RR+   G+H   +R   R  H  R  H       +H+    +  N   +  
Sbjct: 884  QQNDGYRGDRRHRSPGKHIAPARAHNRGQHHNRGHHHGP--PRNHNQDRNRHRNHDGNRH 941

Query: 182  RNGRRNVHHQQWRRFRVSDGNANHQSASICYTGYARHLRAAHRSERPSR 328
            +N  R+ HH Q R  R +     HQS              AH   RP R
Sbjct: 942  QNQDRSRHHNQDRNRRQNHDRNRHQSQGRNRQQDHERGDEAHEEARPDR 990


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = +2

Query: 11  RKRDNL*GLRRYFGSGRHTERSR---RAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDR 181
           ++ D   G RR+   G+H   +R   R  H  R  H       +H+    +  N   +  
Sbjct: 40  QQNDGYRGDRRHRSPGKHIAPARAHNRGQHHNRGHHHGP--PRNHNQDRNRHRNHDGNRH 97

Query: 182 RNGRRNVHHQQWRRFRVSDGNANHQS 259
           +N  R+ HH Q R  R +     HQS
Sbjct: 98  QNQDRSRHHNQDRNRRQNHDRNRHQS 123


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
           protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 335 PDHDLAVQSDGPLEDAVHTQYSRLRRIDDWRSHQRPENAAIADGERSAVHF 183
           P  +  +Q+DGP E+ V   Y +L   +   S   PE   + +G R  + F
Sbjct: 10  PQLEEFLQNDGPTEEEVRVWYDKLAEYEIEGSESPPEIELLYNGARYLMGF 60


>AL110479-2|CAB54350.2|  438|Caenorhabditis elegans Hypothetical
           protein Y105C5B.3 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 131 ELDISISHVLNVSDDRHDETFRCGDRYRNI---YVVPINYLVFFDN 3
           +LD+ I H+ +++ D HDE    GD Y N    +   + Y+VF  N
Sbjct: 151 QLDVII-HIGDLAYDLHDENGATGDDYMNAIEPFAAYVPYMVFAGN 195


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 391 ASRPSISLWS*VRAIYIMG----LITTWPFRAMGRSKMPC 284
           AS  +IS+W     IY++G    LI    F +MGRSK  C
Sbjct: 429 ASLNAISIWQLFTYIYVIGIVIELIIITLFASMGRSKTCC 468


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 84  PVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSL 236
           P+  +V N+  + +     G+A    + +  + E  G TF+++ G +  SL
Sbjct: 496 PITSSVTNLNKSGLRAPATGIANDVESARKLMREKLGPTFSLNKGDISFSL 546


>AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 684 GYVLFVLFIVIFSN 725
           GYV FV+F+V+FSN
Sbjct: 146 GYVFFVIFMVVFSN 159


>AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical
           protein F27E11.1 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 684 GYVLFVLFIVIFSN 725
           GYV FV+F+V+FSN
Sbjct: 146 GYVFFVIFMVVFSN 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,750
Number of Sequences: 27780
Number of extensions: 315180
Number of successful extensions: 794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)