Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m10
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    30   2.0  
U88177-1|AAB42290.1|  220|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 61  VVFSVQFSRCSCIFYQCL-ITVLSSRSVNMANTDFRKDVTMPVRPRSVYTAHSYNQEESN 237
           V++S +F RC C+ Y+CL + ++  +++  + T  +          S     SYN    N
Sbjct: 8   VIYSYKFCRCLCV-YRCLWLFLIMLKNLETSKTFLKAAQNFRTPFSSFSLGTSYNSNHKN 66

Query: 238 LSAFQD 255
            ++F +
Sbjct: 67  RTSFSN 72


>U88177-1|AAB42290.1|  220|Caenorhabditis elegans Hypothetical
           protein F53E10.4 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 385 DTWRELEVTDVMGGAGYNASVTPHGTICLRLRDRVKVDMTMDGAVRVTNAKN 540
           D W +L VT+   G GYN ++T    +    RDR + ++    A    + KN
Sbjct: 112 DYWIDLAVTEYQCGVGYNLTMTEFYCMAF-CRDRYQPNIDQCDAQAAIDMKN 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,031,122
Number of Sequences: 27780
Number of extensions: 388005
Number of successful extensions: 908
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)