Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m07
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    28   1.1  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    28   1.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   3.4  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   3.4  

>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 140 VCINLKKFSRNEPVPDVTFVFFIRATTRNVEL 45
           V +++   S  +P+ DV  ++F++ T  N+EL
Sbjct: 73  VTVHMNITSFRQPIADVPAIYFVQPTQENIEL 104


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 319 PPSRASAWRFGFDTPHNY 372
           P +RA+ W +G+DT  NY
Sbjct: 367 PENRAALWNYGYDTDANY 384


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -1

Query: 659 PSILRTYLSKHSCVVDFGSS---QTLN-SKNPL*LAVNSTFIVIVDLGAYLRTIIPFPNL 492
           P I R+Y +KH   +  G+S    +L+ S+ P+ +  N+T      L + ++T    PNL
Sbjct: 421 PPITRSYNAKHRPSLVLGTSVNPHSLSPSQPPVVVPSNTTISSSPPLTSPVKTSANIPNL 480

Query: 491 PPNS*ARGVLASHGSPQTPH 432
            P S      A H      H
Sbjct: 481 LPTSELDSSNAPHSQSAATH 500


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 137 ILNSIEVICELCFFFFHTTKVEIEI 211
           I+NSI ++C +   +F + K+ +EI
Sbjct: 81  IINSIALVCIIVILYFSSRKLNVEI 105


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 292 LFPMTMLLPPASTIKYSFSLSHFPYIRY 209
           L P +   PPAS I+++ SL+  P ++Y
Sbjct: 177 LSPPSTAKPPASVIEFNPSLAKLPTVKY 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,775
Number of Sequences: 5004
Number of extensions: 66803
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)