Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2m07
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 31 0.65
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 30 2.0
08_01_0924 - 9104908-9105366 29 3.5
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 28 6.0
04_03_0647 + 18367321-18367675,18368044-18368885 28 6.0
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 28 8.0
10_07_0179 - 13860745-13861571,13861940-13862294 28 8.0
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105... 28 8.0
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196 28 8.0
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 317 NLPPERRHGGSDLTRHIITTITNSSAVDSQDNG 415
N PP RRHG S++ I+ +S+ DS D+G
Sbjct: 126 NRPP-RRHGNSEVVSEIVVASPSSNCSDSDDHG 157
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 244 NILWCWLVVIALSWGRASGHGRLIEPPSRASAWRFGFDTPHNYNDHELFCGGFSRQ 411
++L C++V+I L + LI PP R S W+ G ++ D E G F ++
Sbjct: 220 DVLRCFMVIIYLDFKDFGIRNILIGPPPRISVWKGGMIKEYSKMD-ECKTGDFGKR 274
>08_01_0924 - 9104908-9105366
Length = 152
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 428 PSFLFH-CLENPPQKSS*SL*LCGVSNPNLHADAREGGSMRRP*PLALPHDNAITTSQ 258
P+FL + PP + S + V++P DA EGG+ RP P + A+ +Q
Sbjct: 94 PTFLAAPIVRRPPSTDTSSSAVAEVASPENGCDAAEGGAASRPPPQPVAARQAVQLAQ 151
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 220 TGSVIVKMNILWCWLVVIALSWGRASGHGRLIEPPSRASAWRFG 351
T +V + W +V + GR+ G+G ++ P A+ W FG
Sbjct: 358 TAAVAFPEGVARTWPMVGVMRHGRSDGNGEVVRP--EAAVWPFG 399
>04_03_0647 + 18367321-18367675,18368044-18368885
Length = 398
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 517 RKYAPKSTITIKVELTASHNGFFEFKVCEEPKSTTQECLDKYVLKMDGK 663
+K K T I +++T GFF+ K T +ECL K V +DG+
Sbjct: 284 KKAKGKKTPEIPIKMTIKEEGFFK-------KPTNKECLTKGVDPLDGE 325
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 517 RKYAPKSTITIKVELTASHNGFFEFKVCEEPKSTTQECLDKYVLKMDGK 663
+K K T I +++T GFF+ K T +ECL K V +DG+
Sbjct: 776 KKAKGKKTSEIPIKMTIKEEGFFK-------KPTYKECLTKGVDPLDGE 817
>10_07_0179 - 13860745-13861571,13861940-13862294
Length = 393
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 517 RKYAPKSTITIKVELTASHNGFFEFKVCEEPKSTTQECLDKYVLKMDGK 663
+K K T I +++T GFF+ K T +ECL K V +DG+
Sbjct: 284 KKAKGKKTSEIPIKMTIKEEGFFK-------KPTYKECLTKGVDPLDGE 325
>09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,
1059427-1060269,1061572-1062552,1063189-1063516
Length = 1043
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 517 RKYAPKSTITIKVELTASHNGFFEFKVCEEPKSTTQECLDKYVLKMDGK 663
+K K T I +++T GFF+ K T +ECL K V +DG+
Sbjct: 934 KKAKGKKTSEIPIKMTIKEEGFFK-------KPTYKECLTKGVDPLDGE 975
>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
Length = 933
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 517 RKYAPKSTITIKVELTASHNGFFEFKVCEEPKSTTQECLDKYVLKMDGK 663
+K K T I +++T GFF+ K T +ECL K V +DG+
Sbjct: 824 KKAKGKKTSEIPIKMTIKEEGFFK-------KPTYKECLTKGVDPLDGE 865
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651,651
Number of Sequences: 37544
Number of extensions: 446155
Number of successful extensions: 1075
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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