Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2m06
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 77 2e-15
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 36 0.007
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 28 1.4
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 27 3.3
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 27 3.3
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 26 4.4
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 26 5.8
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 25 7.7
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.7
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 7.7
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 25 7.7
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 77.0 bits (181), Expect = 2e-15
Identities = 45/132 (34%), Positives = 68/132 (51%)
Frame = +1
Query: 199 VDLAYKIHGKPLSKNSVPILVIHGLMGSKKNFESXXXXXXXXXXXXXXXVDLRNHGDSPH 378
V LA++ + ++K+ P+L+ HGL+GSK+N+ S +D R HGDSP
Sbjct: 6 VKLAFEKYSATVAKHP-PVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPC 64
Query: 379 TSSHTYLELAADISHLMKKVSVKRAKIVGHSMGGRTAMVLALTEVRSNPENMSKSCVPKL 558
+ +Y +A D MK + +A I+GHSMG +TAMV AL P+ + K V
Sbjct: 65 VAPLSYSAMALDAFQFMKDHKLDKASIIGHSMGAKTAMVTAL----KWPDKVEKLVVVDN 120
Query: 559 PDFQQSKGRKFG 594
+ Q R +G
Sbjct: 121 SPWYQDLPRDYG 132
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 35.5 bits (78), Expect = 0.007
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +1
Query: 397 LELAADISHLMKKVSVKRAKI-----VGHSMGGRTAMVLALTEVRSNPENMSKSCVPKLP 561
+EL + L KK+ V A + +G + +TA VLA+TEVR +N S V +
Sbjct: 160 IELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAV- 218
Query: 562 DFQQSKGRKFGRCRHISGLNGGPTQRFLSRTSKS 663
D S R + G+ GG TQ L++ +K+
Sbjct: 219 DANFSAKYDESRRKWGGGIMGGKTQALLAKRAKA 252
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 436 VSVKRAKIVGHSMGGRTAMVLALTEVRSN 522
+S + +K++ +S GG T ++A +VRSN
Sbjct: 213 ISGEASKLIENSFGGLTKRIIACLDVRSN 241
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 590 NLRPLDCWKSGSFGTQDFDIFSGLLLTSV---KASTIAVLPPILCPTIFALFTETFFI 426
N RPLD W G +G + + +L+ V K P LC T+ A F+ F+
Sbjct: 337 NYRPLDIWLKGYWGRVVSILLNTILVYMVSNWKHRFPVFFPIFLCYTLNASFSTIQFV 394
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 249 SYTGDTRVNGLQKELREYRQKHSSHHEEYRHHCRFTKSRRQSSHELTYVPRIGR*YIPSN 428
S +GD + L ++ + + +HC + SRR SS+ L Y+ + Y SN
Sbjct: 466 SSSGDFSALSCHRNLSFSESLPTAEDQVHNNHCAVSPSRRSSSNAL-YLATLPMGYERSN 524
Query: 429 EESF 440
S+
Sbjct: 525 SVSY 528
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 275 INPCITSIGTLFLERGFPCILYAKSTVERLQ--KNIKDITFLFKS 147
+ PCI+ +G PC K +RL+ KNI+ IT K+
Sbjct: 12 MRPCISVVGFRGFHASSPCEATLKEIEQRLKSIKNIEKITKTIKT 56
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 352 LRNHGDSPHTSSHTYLELA 408
L +HGD+P ++ +T +ELA
Sbjct: 347 LHHHGDAPFSAGYTLVELA 365
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 530 FSGLLLTSVKASTIAVLPPILCPTIFALFTETFFIRWDISAANSR 396
FS L ++ ++ + ++C +FA F T IR D+ +SR
Sbjct: 231 FSSLRSILFRSEGLSFVQFLVCIAVFATFMYTLNIRIDVPIRSSR 275
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 279 LQKELREYRQKHSSHHEEYRHHCRFTKSRRQSSHELTYVPRIGR*YIPSN--EESFRKKS 452
L+ + + +Q+ S HE++R H K ++ +E + I SN +E K+
Sbjct: 760 LEDMIHDEQQETKSGHEQFREHAMKEKEKKGKENENMGETTVDHENINSNVMDEQGEKQK 819
Query: 453 ED 458
+D
Sbjct: 820 DD 821
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 349 DLRNHGDSPHTSSHTYLELAADISHLMKKVSVKRAKIVGHSMGGRTAMVLALTEVRSNPE 528
DL++ G S + +++D+ + + +K+AKI + +T ++LA+ N
Sbjct: 151 DLKSEGAQEIDSQSETVSISSDVDYDEDRKDLKKAKICS-AYYLKTRLLLAVLSFAQNDS 209
Query: 529 NMS-KSCVPKLPD 564
S VP L D
Sbjct: 210 TFSLLKLVPSLQD 222
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 240 EQCSYTGDTRVNGLQKELREYRQKHSSHHEEYRHHCRFTKSRRQSSHE 383
++ YT D V+ + E Q+H HHE +H K + HE
Sbjct: 517 QKMGYTNDDHVSQ-HEHTHENSQEH--HHEHNHNHDHIHKYNEKCDHE 561
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 457 SSLFLRKLSSLDGIYQRPILGTYVSSCEDCRRDFVNL 347
+ L +R++S + + ++ +LG + +C D +R+ V L
Sbjct: 305 NDLPVREVSGIGRVLEQQLLGLEIKTCGDIQRNLVIL 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,276
Number of Sequences: 5004
Number of extensions: 66465
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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