Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2m06
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1587 + 38468956-38469090,38470599-38470742,38470819-384708... 44 9e-05
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 38 0.006
09_06_0360 - 22510132-22510433,22510577-22510716,22510979-225110... 35 0.069
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 33 0.28
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994... 32 0.37
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674... 31 0.64
04_04_0005 + 22095107-22095210,22095347-22095431,22095553-220956... 30 1.5
01_07_0130 + 41262652-41262798,41262958-41263056,41263155-412632... 30 1.5
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030... 30 1.5
12_02_0727 - 22564183-22564815,22564906-22565073,22565264-225653... 29 3.4
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 4.5
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 29 4.5
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 28 6.0
>01_06_1587 +
38468956-38469090,38470599-38470742,38470819-38470845,
38470970-38471060,38471224-38471267,38471352-38471450,
38472233-38472331,38472545-38472646,38472758-38472823,
38472960-38473084,38473175-38473346,38473588-38473674
Length = 396
Score = 44.4 bits (100), Expect = 9e-05
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 LVIHGLMGSKKNFESXXXXXXXXXXXXXXX-VDLRNHGDSPHTSS---HTYLELAADISH 423
+++HG++GS+KN+ S VDLR HGDS HT A D+
Sbjct: 120 VLLHGILGSRKNWGSFAKRLAQEFPMWQFLLVDLRCHGDSASIKKRGPHTVASTALDVLK 179
Query: 424 LMKKVSVKRAKIVGHSMGGR 483
L+ ++ + +VGHS GG+
Sbjct: 180 LIVQLRLTPRVLVGHSFGGK 199
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 38.3 bits (85), Expect = 0.006
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Frame = +1
Query: 196 TVDLAY-KIHGKPLSKNSVPILVIHGLMGSKKNFE-------SXXXXXXXXXXXXXXXVD 351
T LA+ +I P ++ V+HGL+GS +N+ S VD
Sbjct: 43 TETLAFDEIQLSPEKPSTATAFVLHGLLGSGRNWRSFSRALASELRDRSPSDEWRMVLVD 102
Query: 352 LRNHGDSPHTSS----HTYLELAADISHLMK-KVSVKRAKIVGHSMGGRTAMVLA 501
LRNHG S H A D++ L+K + +VGHSMGG+ A+ A
Sbjct: 103 LRNHGRSAGIKGLRPPHDMSTAARDLADLVKARGWAWPDVVVGHSMGGKVALDFA 157
>09_06_0360 -
22510132-22510433,22510577-22510716,22510979-22511049,
22511152-22511352,22511541-22511786,22512148-22512209,
22512314-22512620
Length = 442
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 385 SHTYLELAADISHLMKKVSVKRAKIVGHSMGGRTAMVLALTEVRSNPENMSKS 543
+HT +L D+ L K K ++VGHS+GG +A +LA+ + + E + S
Sbjct: 188 THTVYDLVTDLIALSDKKDYK-LRLVGHSLGGASAALLAIMLRKKSKEELGFS 239
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 373 PHTSSHTYLELAADISHLMKKVSVKRAKIVGHSMGGRTAMVLA 501
PH S ++ + +A D LM + K+A + GHSMG + LA
Sbjct: 96 PHKSYYSTVIMARDALALMDHLGWKKAHVFGHSMGAMISCKLA 138
>02_05_0960 +
33097510-33097821,33098846-33099043,33099174-33099446,
33099575-33099677,33100297-33100415,33100968-33101759
Length = 598
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 448 RAKIVGHSMGGRTAMVLALTEVRSNPENMSKSCVPKLP 561
+ KIVGHS+GG TA +L +R E S +CV P
Sbjct: 259 KIKIVGHSLGGGTAALLTYV-LREQQEFASTTCVSFAP 295
>11_06_0618 +
25565780-25566064,25566855-25567046,25567144-25567416,
25567636-25567738,25568273-25568391,25568615-25568782,
25568908-25569386,25569742-25569850,25569905-25570070,
25571405-25571433
Length = 640
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 415 ISHLMKKVSVKRAKIVGHSMGGRTAMVLALTEVRSNPENMSKSCV 549
+S +++ R KI+GHSMG A +L +R N + S SC+
Sbjct: 237 LSRAVEQFPDYRIKIIGHSMGAGIAAILTYM-LRENKKLSSSSCI 280
>04_04_0005 +
22095107-22095210,22095347-22095431,22095553-22095623,
22096613-22096727,22096884-22096963,22097302-22097386,
22098081-22098175,22098298-22098348,22098866-22098946,
22099659-22099731,22100057-22100134,22100224-22100256
Length = 316
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +1
Query: 346 VDLRNHGDSPHTS-SHTYLE-LAADISHLMKKV---SVKRAKIVGHSMGGRTAMVLALTE 510
+DLR HG S + S +E L++D+ +++ + S +VGHSMGG A+ +A +
Sbjct: 106 MDLRGHGKSTTSDDSDLSIETLSSDVIAVLRTLYGDSPPAIILVGHSMGGSVAIHVAAKK 165
Query: 511 VRSN 522
V N
Sbjct: 166 VIRN 169
>01_07_0130 +
41262652-41262798,41262958-41263056,41263155-41263220,
41264073-41264255
Length = 164
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 400 ELAADISHLMKKVSVKRAKIVGHSMGGRTAMVLAL 504
EL +S ++++ RA I GHSMGG A+ + L
Sbjct: 8 ELPKVLSDNFEQLNTSRASIFGHSMGGHGALTIYL 42
>01_03_0009 +
11601394-11601666,11602486-11602683,11602809-11603081,
11603493-11603595,11603666-11603784,11604038-11604214,
11604443-11605192
Length = 630
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 454 KIVGHSMGGRTAMVLALTEVRSNPENMSKSCVPKLP 561
++VGHS+GG TA +L +R + E S +CV P
Sbjct: 248 RVVGHSLGGGTAALLTYI-LREHQELSSTTCVAFAP 282
>12_02_0727 -
22564183-22564815,22564906-22565073,22565264-22565382,
22565796-22565898,22566702-22566974,22567088-22567279,
22568289-22568615
Length = 604
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 454 KIVGHSMGGRTAMVLALTEVRSNPENMSKSCV 549
KI+GHSMG A +LA +R N + S +C+
Sbjct: 264 KIIGHSMGAGIAAILAYI-LRENEKLSSSTCL 294
>09_02_0423 +
9153088-9153181,9153281-9153378,9153532-9153708,
9153827-9153927,9154334-9154490
Length = 208
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 305 AILSKFFLEPIN--PCITSIGTLFLERGFPCILYAKSTVERLQKNIKDITFLFKSSFV 138
AI S+FF P+ P + +G ERGFP + K+ + L + D T F F+
Sbjct: 153 AICSRFF-SPLGMVPVVALVGLGLFERGFPVV---KALIATLTSTLYDSTSQFNVRFL 206
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 28.7 bits (61), Expect = 4.5
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Frame = +1
Query: 253 ILVIHGLMGSKKNFESXXXXXXXXXXXXXXXVDLRNHGDSP---------HTSSHTYLEL 405
IL +HG +G+ +++ VDL HG+S + S + +
Sbjct: 1483 ILFLHGFLGTSEDW--VPMMKALSPSARVIAVDLPGHGESEILQHDVENSNQISFSVQSV 1540
Query: 406 AADISHLMKKVSVKRAKIVGHSMGGRTAMVLALTEVRSNPENMSKSCVPKLPDFQQSKGR 585
A + L++ ++ +VG+SMG R A+ +AL + + S P L D + SK R
Sbjct: 1541 ADLLLKLIRNITDGAVVVVGYSMGARIALHMALNQNHKISGAVIISGSPGLRD-EASKRR 1599
Query: 586 K 588
+
Sbjct: 1600 R 1600
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 249 SYTGDTRVNGLQKELREYRQKHSSHHEEYRHHCRFTKSRRQSSHELTYVPRI 404
SY T V+ + K+ ++YR+ S + H R TKS L Y I
Sbjct: 566 SYNKQTDVHSMPKKSQKYREMKSKEGIQNLEHKRSTKSEATQLKILPYTAEI 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,481
Number of Sequences: 37544
Number of extensions: 410807
Number of successful extensions: 1138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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