Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m01
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   1.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.3  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 492 VTVIPKHDRQRPNKQRLKSKTIKNTS 569
           ++ IP+H++    + +L  +T KNTS
Sbjct: 111 ISSIPRHEKLTAAEIKLTRETAKNTS 136



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 636 EKIYNVENNRE 668
           +KIYN++NN E
Sbjct: 56  KKIYNIQNNFE 66


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 488 NNGLVFFCEIPPNTIEVLRYF 426
           N+ ++  CE PP   E+LR F
Sbjct: 365 NSKMIADCESPPAADELLRRF 385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,546
Number of Sequences: 336
Number of extensions: 3437
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)