Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m01
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.28 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   6.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   8.1  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    25   8.1  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   8.1  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 396 CNSSEVQLSSKVSQNFNGIGRDFAEENKPVIKVTVIPKHDRQRPNKQRLKSKTIKNT 566
           CN+S+   +S+V+   N  G +  + +   I VT IP+  R  P+ Q   S  I+ T
Sbjct: 81  CNNSDQSWTSRVTSKKNEAGTESGDASVRRIYVTSIPEEHRHLPS-QWFPSNKIRTT 136


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 412 SNCQAKYRKTSMVLGGISQKKTSPLLKLL*YPN 510
           +N +   +KT + L GI+ K+ S L +L  YPN
Sbjct: 883 ANLRDYVKKTKINLNGINYKRQSGLRELNTYPN 915


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 482 GLVFFCEIPPNT 447
           GLV  CEIPPNT
Sbjct: 228 GLVSTCEIPPNT 239


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 325 TSSFEGLMKSWGKLFCSLGILLIG 254
           TS ++G +K W  L CSL   ++G
Sbjct: 410 TSGYDGCVKLWNPLNCSLIKSMVG 433


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +3

Query: 507 KHDRQRPNKQRLKSKTIKNTSSDHEYSVHANNLYFIVTGNNSKEKIYNVENNRERG 674
           + ++   N  RLK + +++  SD+   +++ N    +  +N ++    V  NR RG
Sbjct: 85  EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPEKHEDAVSQNRLRG 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,703
Number of Sequences: 5004
Number of extensions: 51454
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)