Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2m01
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0662 - 5052390-5053022,5053182-5053319,5053429-5053656,505...    28   6.4  
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571...    28   8.4  

>01_01_0662 -
           5052390-5053022,5053182-5053319,5053429-5053656,
           5053736-5054035,5054568-5054636
          Length = 455

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +3

Query: 399 NSSEVQLSSKVSQNFNGIGRDFAEENKPVIKVTVIPKHDRQRP----NKQRLKSKTIKNT 566
           +SS   LSSK  ++  GI  DF+E N   ++   + K    +P    + QR+K+++I + 
Sbjct: 313 SSSPDLLSSKNCEDSFGILGDFSEPNSVKVRKNNVSKRVCAKPPVVSHHQRIKAQSISSL 372

Query: 567 SSD 575
           S++
Sbjct: 373 STE 375


>01_01_0733 -
           5715719-5715785,5715908-5715966,5717844-5717884,
           5718086-5718134,5718427-5718559,5719303-5719384,
           5719990-5720472,5720612-5721024,5721260-5721419,
           5721541-5721665,5721756-5721811,5721831-5721889,
           5722069-5722180,5722952-5723032
          Length = 639

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -3

Query: 545 FEPLFVWSLSVVFGYYSNFNNGLVFFCEIPPNTIEVLRYFA*QLDFRRVAKKQ---RALS 375
           F P+  W + +    +  FNN   F   + P  +E+L  FA Q  F+++   +   R  S
Sbjct: 41  FTPIIWWRIKICLSLFVKFNN---FEAVVDP--LELLDLFAWQTVFQQLISYKWLSRNFS 95

Query: 374 TTSFYNRRLRSEDLMEH 324
            +S  ++RL  E + +H
Sbjct: 96  VSSNDSKRLLQEFVNKH 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,584
Number of Sequences: 37544
Number of extensions: 277770
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)